The complete mitochondrial genome of the Korean endemic species Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003)
As one of efforts to conserve a genetic resource of the endemic cobitid species in the Korean peninsula, the complete mitogenome of Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) was determined using Illumina MiSeq system. The circular mitogenome was 16,557 bp length and encoded 13 protein...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.2005496 |
| _version_ | 1797638687166562304 |
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| author | Soo Rin Lee Eun-Bi Kim Yunji Go Yuan Kang Md. Jobaidul Alam Kyung Su Kim Sapto Andriyono Hyun-Woo Kim |
| author_facet | Soo Rin Lee Eun-Bi Kim Yunji Go Yuan Kang Md. Jobaidul Alam Kyung Su Kim Sapto Andriyono Hyun-Woo Kim |
| author_sort | Soo Rin Lee |
| collection | DOAJ |
| description | As one of efforts to conserve a genetic resource of the endemic cobitid species in the Korean peninsula, the complete mitogenome of Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) was determined using Illumina MiSeq system. The circular mitogenome was 16,557 bp length and encoded 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 tRNA genes, and a control region. Only the COX1 gene was identified with an aberrant initiation codon GTG, and an incomplete termination codon (T—/TA–) was identified in six PCGs including COX2, COX3, ND2, ND3, ND4, and Cytb genes. Phylogenetic analysis using 30 mitochondrial genomes belonging to Cobitidae, Botiidae, and Gyrinocheilidae showed that the highest identity (92.38%) with Kichulchoia brevifasciata (NC_027166). The complete mitogenome of C. hankugensis, an endemic species in Korea, will provide fundamental data on the evolutionary relationship of Cobitidae species. |
| first_indexed | 2024-03-11T13:06:11Z |
| format | Article |
| id | doaj.art-15103ae36db44d388303126857251467 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:11Z |
| publishDate | 2022-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-15103ae36db44d3883031268572514672023-11-03T14:36:00ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-01-0171212210.1080/23802359.2021.20054962005496The complete mitochondrial genome of the Korean endemic species Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003)Soo Rin Lee0Eun-Bi Kim1Yunji Go2Yuan Kang3Md. Jobaidul Alam4Kyung Su Kim5Sapto Andriyono6Hyun-Woo Kim7Industry 4.0 Convergence Bionics Engineering, Pukyong National UniversityIndustry 4.0 Convergence Bionics Engineering, Pukyong National UniversityDepartment of Marine Biology, Pukyong National UniversityDepartment of Marine Biology, Pukyong National UniversityDepartment of FisheriesGyeongsangnam-do Freshwater Fish Research CenterFisheries and Marine Faculty, C Campus Jl, Universitas AirlanggaDepartment of Marine Biology, Pukyong National UniversityAs one of efforts to conserve a genetic resource of the endemic cobitid species in the Korean peninsula, the complete mitogenome of Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) was determined using Illumina MiSeq system. The circular mitogenome was 16,557 bp length and encoded 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 tRNA genes, and a control region. Only the COX1 gene was identified with an aberrant initiation codon GTG, and an incomplete termination codon (T—/TA–) was identified in six PCGs including COX2, COX3, ND2, ND3, ND4, and Cytb genes. Phylogenetic analysis using 30 mitochondrial genomes belonging to Cobitidae, Botiidae, and Gyrinocheilidae showed that the highest identity (92.38%) with Kichulchoia brevifasciata (NC_027166). The complete mitogenome of C. hankugensis, an endemic species in Korea, will provide fundamental data on the evolutionary relationship of Cobitidae species.http://dx.doi.org/10.1080/23802359.2021.2005496next generation sequencingcobitis hankugensismitochondrial genomecobitidae |
| spellingShingle | Soo Rin Lee Eun-Bi Kim Yunji Go Yuan Kang Md. Jobaidul Alam Kyung Su Kim Sapto Andriyono Hyun-Woo Kim The complete mitochondrial genome of the Korean endemic species Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) Mitochondrial DNA. Part B. Resources next generation sequencing cobitis hankugensis mitochondrial genome cobitidae |
| title | The complete mitochondrial genome of the Korean endemic species Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) |
| title_full | The complete mitochondrial genome of the Korean endemic species Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) |
| title_fullStr | The complete mitochondrial genome of the Korean endemic species Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) |
| title_full_unstemmed | The complete mitochondrial genome of the Korean endemic species Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) |
| title_short | The complete mitochondrial genome of the Korean endemic species Cobitis hankugensis (Kim, Park, Son & Nalbant, 2003) |
| title_sort | complete mitochondrial genome of the korean endemic species cobitis hankugensis kim park son nalbant 2003 |
| topic | next generation sequencing cobitis hankugensis mitochondrial genome cobitidae |
| url | http://dx.doi.org/10.1080/23802359.2021.2005496 |
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