Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant
To explore changes in proteins and metabolites under stress circumstances, genomics, proteomics, and metabolomics methods are used. In-depth research over the previous ten years has gradually revealed the fundamental processes of plants’ responses to environmental stress. Abiotic stresses, which inc...
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MDPI AG
2023-02-01
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| Series: | International Journal of Molecular Sciences |
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| Online Access: | https://www.mdpi.com/1422-0067/24/3/3025 |
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| author | Bindu Naik Vijay Kumar Sheikh Rizwanuddin Mansi Chauhan Megha Choudhary Arun Kumar Gupta Pankaj Kumar Vivek Kumar Per Erik Joakim Saris Muzamil Ahmad Rather Shuvam Bhuyan Panchi Rani Neog Sadhna Mishra Sarvesh Rustagi |
| author_facet | Bindu Naik Vijay Kumar Sheikh Rizwanuddin Mansi Chauhan Megha Choudhary Arun Kumar Gupta Pankaj Kumar Vivek Kumar Per Erik Joakim Saris Muzamil Ahmad Rather Shuvam Bhuyan Panchi Rani Neog Sadhna Mishra Sarvesh Rustagi |
| author_sort | Bindu Naik |
| collection | DOAJ |
| description | To explore changes in proteins and metabolites under stress circumstances, genomics, proteomics, and metabolomics methods are used. In-depth research over the previous ten years has gradually revealed the fundamental processes of plants’ responses to environmental stress. Abiotic stresses, which include temperature extremes, water scarcity, and metal toxicity brought on by human activity and urbanization, are a major cause for concern, since they can result in unsustainable warming trends and drastically lower crop yields. Furthermore, there is an emerging reliance on agrochemicals. Stress is responsible for physiological transformations such as the formation of reactive oxygen, stomatal opening and closure, cytosolic calcium ion concentrations, metabolite profiles and their dynamic changes, expression of stress-responsive genes, activation of potassium channels, etc. Research regarding abiotic stresses is lacking because defense feedbacks to abiotic factors necessitate regulating the changes that activate multiple genes and pathways that are not properly explored. It is clear from the involvement of these genes that plant stress response and adaptation are complicated processes. Targeting the multigenicity of plant abiotic stress responses caused by genomic sequences, transcripts, protein organization and interactions, stress-specific and cellular transcriptome collections, and mutant screens can be the first step in an integrative approach. Therefore, in this review, we focused on the genomes, proteomics, and metabolomics of tomatoes under abiotic stress. |
| first_indexed | 2024-03-11T09:38:35Z |
| format | Article |
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| institution | Directory Open Access Journal |
| issn | 1661-6596 1422-0067 |
| language | English |
| last_indexed | 2024-03-11T09:38:35Z |
| publishDate | 2023-02-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | International Journal of Molecular Sciences |
| spelling | doaj.art-15222bef40794b13b07d7d0617e413192023-11-16T17:05:52ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672023-02-01243302510.3390/ijms24033025Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato PlantBindu Naik0Vijay Kumar1Sheikh Rizwanuddin2Mansi Chauhan3Megha Choudhary4Arun Kumar Gupta5Pankaj Kumar6Vivek Kumar7Per Erik Joakim Saris8Muzamil Ahmad Rather9Shuvam Bhuyan10Panchi Rani Neog11Sadhna Mishra12Sarvesh Rustagi13Department of Food Science and Technology, Graphic Era (Deemed to Be) University, Bell Road, Clement Town, Dehradun 248002, Uttarakhand, IndiaHimalayan School of Biosciences, Swami Rama Himalayan University, Swami Rama Nagar, Jolly Grant, Dehradun 248014, Uttarakhand, IndiaDepartment of Life Sciences, Graphic Era (Deemed to Be) University, Bell Road, Clement Town, Dehradun 248002, Uttarakhand, IndiaDepartment of Life Sciences, Graphic Era (Deemed to Be) University, Bell Road, Clement Town, Dehradun 248002, Uttarakhand, IndiaHimalayan School of Biosciences, Swami Rama Himalayan University, Swami Rama Nagar, Jolly Grant, Dehradun 248014, Uttarakhand, IndiaDepartment of Food Science and Technology, Graphic Era (Deemed to Be) University, Bell Road, Clement Town, Dehradun 248002, Uttarakhand, IndiaDepartment of Microbiology, Dolphin (PG) Institute of Biomedical and Natural Sciences, Dehradun 248007, Uttarakhand, IndiaHimalayan School of Biosciences, Swami Rama Himalayan University, Swami Rama Nagar, Jolly Grant, Dehradun 248014, Uttarakhand, IndiaDepartment of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, FI-00014 Helsinki, FinlandDepartment of Molecular Biology and Biotechnology, Tezpur University, Tezpur 784028, Assam, IndiaDepartment of Molecular Biology and Biotechnology, Tezpur University, Tezpur 784028, Assam, IndiaDepartment of Molecular Biology and Biotechnology, Tezpur University, Tezpur 784028, Assam, IndiaFaculty of Agricultural Sciences, GLA University, Mathura 281406, Uttar Pradesh, IndiaDepartment of Food Technology, Uttaranchal University, Dehradun 248007, Uttarakhand, IndiaTo explore changes in proteins and metabolites under stress circumstances, genomics, proteomics, and metabolomics methods are used. In-depth research over the previous ten years has gradually revealed the fundamental processes of plants’ responses to environmental stress. Abiotic stresses, which include temperature extremes, water scarcity, and metal toxicity brought on by human activity and urbanization, are a major cause for concern, since they can result in unsustainable warming trends and drastically lower crop yields. Furthermore, there is an emerging reliance on agrochemicals. Stress is responsible for physiological transformations such as the formation of reactive oxygen, stomatal opening and closure, cytosolic calcium ion concentrations, metabolite profiles and their dynamic changes, expression of stress-responsive genes, activation of potassium channels, etc. Research regarding abiotic stresses is lacking because defense feedbacks to abiotic factors necessitate regulating the changes that activate multiple genes and pathways that are not properly explored. It is clear from the involvement of these genes that plant stress response and adaptation are complicated processes. Targeting the multigenicity of plant abiotic stress responses caused by genomic sequences, transcripts, protein organization and interactions, stress-specific and cellular transcriptome collections, and mutant screens can be the first step in an integrative approach. Therefore, in this review, we focused on the genomes, proteomics, and metabolomics of tomatoes under abiotic stress.https://www.mdpi.com/1422-0067/24/3/3025abiotic stressclimate variabilitymetabolic reactionsphytohormonesdefense feedbacktranscriptional changes |
| spellingShingle | Bindu Naik Vijay Kumar Sheikh Rizwanuddin Mansi Chauhan Megha Choudhary Arun Kumar Gupta Pankaj Kumar Vivek Kumar Per Erik Joakim Saris Muzamil Ahmad Rather Shuvam Bhuyan Panchi Rani Neog Sadhna Mishra Sarvesh Rustagi Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant International Journal of Molecular Sciences abiotic stress climate variability metabolic reactions phytohormones defense feedback transcriptional changes |
| title | Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant |
| title_full | Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant |
| title_fullStr | Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant |
| title_full_unstemmed | Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant |
| title_short | Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant |
| title_sort | genomics proteomics and metabolomics approaches to improve abiotic stress tolerance in tomato plant |
| topic | abiotic stress climate variability metabolic reactions phytohormones defense feedback transcriptional changes |
| url | https://www.mdpi.com/1422-0067/24/3/3025 |
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