Identification of main effect and epistatic QTLs controlling initial flowering date in cultivated peanut (Arachis hypogaea L.)
Initial flowering date (IFD) is closely related to mature period of peanut pods. In present study, a population of recombinant inbred lines (RIL) derived from the cross between Silihong (female parent) and Jinonghei 3 (male parent) was used to map QTLs associated with IFD. The RIL population and its...
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| Format: | Article |
| Language: | English |
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Elsevier
2020-10-01
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| Series: | Journal of Integrative Agriculture |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2095311920632117 |
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| author | Liang WANG Xin-lei YANG Shun-li CUI Ji-hong WANG Ming-yu HOU Guo-jun MU Zi-chao LI Li-feng LIU |
| author_facet | Liang WANG Xin-lei YANG Shun-li CUI Ji-hong WANG Ming-yu HOU Guo-jun MU Zi-chao LI Li-feng LIU |
| author_sort | Liang WANG |
| collection | DOAJ |
| description | Initial flowering date (IFD) is closely related to mature period of peanut pods. In present study, a population of recombinant inbred lines (RIL) derived from the cross between Silihong (female parent) and Jinonghei 3 (male parent) was used to map QTLs associated with IFD. The RIL population and its two parental cultivars were planted in two locations of Hebei Province, China from 2015 to 2018 (eight environments). Based on a high-density genetic linkage map (including 2 996 SNP and 330 SSR markers) previously constructed in our laboratory, QTLs were analyzed using phenotypic data and the best linear unbiased prediction (BLUP) value of initial flowering date by inclusive composite interval mapping (ICIM) method. Interaction effects between every two QTLs and between individual QTL and environment were also analyzed. In cultivated peanut, IFD was affected by genotypic factor and environments simultaneously, and its broad sense heritability (h2) was estimated as 86.8%. Using the IFD phenotypic data from the eight environments, a total of 19 QTLs for IFD were detected, and the phenotypic variation explained (PVE) by each QTL ranged from 1.15 to 21.82%. Especially, five of them were also detected by the BLUP value of IFD. In addition, 12 additive QTLs and 35 pairs of epistatic QTLs (62 loci involved) were identified by the joint analysis of IFD across eight environments. Three QTLs (qIFDB04.1, qIFDB07.1 and qIFDB08.1) located on chromosome B04, B07 and B08 were identified as main-effect QTL for IFD, which had the most potential to be used in peanut breeding. This study would be helpful for the early-maturity and adaptability breeding in cultivated peanut. |
| first_indexed | 2024-12-14T17:31:02Z |
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| id | doaj.art-155d1d26cb524329a1e46381327ee96f |
| institution | Directory Open Access Journal |
| issn | 2095-3119 |
| language | English |
| last_indexed | 2024-12-14T17:31:02Z |
| publishDate | 2020-10-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Journal of Integrative Agriculture |
| spelling | doaj.art-155d1d26cb524329a1e46381327ee96f2022-12-21T22:53:05ZengElsevierJournal of Integrative Agriculture2095-31192020-10-01191023832393Identification of main effect and epistatic QTLs controlling initial flowering date in cultivated peanut (Arachis hypogaea L.)Liang WANG0Xin-lei YANG1Shun-li CUI2Ji-hong WANG3Ming-yu HOU4Guo-jun MU5Zi-chao LI6Li-feng LIU7College of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources, Ministry of Education/State Key Laboratory of North China Crop Improvement and Regulation, Baoding 071001, P.R.China; College of Agronomy and Biotechnology, China Agricultural University/Key Laboratory of Crop Heterosis and Utilization, Ministry of Education/Beijing Key Laboratory of Crop Genetic Improvement, Beijing 100193, P.R.China; Crop Research Institute, Xinjiang Academy of Agricultural and Reclamation Sciences, Shihezi 832000, P.R.China; Correspondence WANG Liang, Tel: +86-312-7528136College of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources, Ministry of Education/State Key Laboratory of North China Crop Improvement and Regulation, Baoding 071001, P.R.ChinaCollege of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources, Ministry of Education/State Key Laboratory of North China Crop Improvement and Regulation, Baoding 071001, P.R.ChinaSchool of Statistics, University of International Business and Economics, Beijing 100029, P.R.China; College of Science, Shihezi University, Shihezi 832003, P.R.ChinaCollege of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources, Ministry of Education/State Key Laboratory of North China Crop Improvement and Regulation, Baoding 071001, P.R.ChinaCollege of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources, Ministry of Education/State Key Laboratory of North China Crop Improvement and Regulation, Baoding 071001, P.R.ChinaCollege of Agronomy and Biotechnology, China Agricultural University/Key Laboratory of Crop Heterosis and Utilization, Ministry of Education/Beijing Key Laboratory of Crop Genetic Improvement, Beijing 100193, P.R.China; Correspondence LI Zi-chao, Tel: +86-10-62731414College of Agronomy, Hebei Agricultural University/North China Key Laboratory for Crop Germplasm Resources, Ministry of Education/State Key Laboratory of North China Crop Improvement and Regulation, Baoding 071001, P.R.China; Correspondence LIU Li-feng, Tel: +86-312-7528136Initial flowering date (IFD) is closely related to mature period of peanut pods. In present study, a population of recombinant inbred lines (RIL) derived from the cross between Silihong (female parent) and Jinonghei 3 (male parent) was used to map QTLs associated with IFD. The RIL population and its two parental cultivars were planted in two locations of Hebei Province, China from 2015 to 2018 (eight environments). Based on a high-density genetic linkage map (including 2 996 SNP and 330 SSR markers) previously constructed in our laboratory, QTLs were analyzed using phenotypic data and the best linear unbiased prediction (BLUP) value of initial flowering date by inclusive composite interval mapping (ICIM) method. Interaction effects between every two QTLs and between individual QTL and environment were also analyzed. In cultivated peanut, IFD was affected by genotypic factor and environments simultaneously, and its broad sense heritability (h2) was estimated as 86.8%. Using the IFD phenotypic data from the eight environments, a total of 19 QTLs for IFD were detected, and the phenotypic variation explained (PVE) by each QTL ranged from 1.15 to 21.82%. Especially, five of them were also detected by the BLUP value of IFD. In addition, 12 additive QTLs and 35 pairs of epistatic QTLs (62 loci involved) were identified by the joint analysis of IFD across eight environments. Three QTLs (qIFDB04.1, qIFDB07.1 and qIFDB08.1) located on chromosome B04, B07 and B08 were identified as main-effect QTL for IFD, which had the most potential to be used in peanut breeding. This study would be helpful for the early-maturity and adaptability breeding in cultivated peanut.http://www.sciencedirect.com/science/article/pii/S2095311920632117peanut (Arachis hypogaea L.)initial flowering date (IFD)QTLbest linear unbiased prediction (BLUP)ICIM |
| spellingShingle | Liang WANG Xin-lei YANG Shun-li CUI Ji-hong WANG Ming-yu HOU Guo-jun MU Zi-chao LI Li-feng LIU Identification of main effect and epistatic QTLs controlling initial flowering date in cultivated peanut (Arachis hypogaea L.) Journal of Integrative Agriculture peanut (Arachis hypogaea L.) initial flowering date (IFD) QTL best linear unbiased prediction (BLUP) ICIM |
| title | Identification of main effect and epistatic QTLs controlling initial flowering date in cultivated peanut (Arachis hypogaea L.) |
| title_full | Identification of main effect and epistatic QTLs controlling initial flowering date in cultivated peanut (Arachis hypogaea L.) |
| title_fullStr | Identification of main effect and epistatic QTLs controlling initial flowering date in cultivated peanut (Arachis hypogaea L.) |
| title_full_unstemmed | Identification of main effect and epistatic QTLs controlling initial flowering date in cultivated peanut (Arachis hypogaea L.) |
| title_short | Identification of main effect and epistatic QTLs controlling initial flowering date in cultivated peanut (Arachis hypogaea L.) |
| title_sort | identification of main effect and epistatic qtls controlling initial flowering date in cultivated peanut arachis hypogaea l |
| topic | peanut (Arachis hypogaea L.) initial flowering date (IFD) QTL best linear unbiased prediction (BLUP) ICIM |
| url | http://www.sciencedirect.com/science/article/pii/S2095311920632117 |
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