Results of Detecting SARS-CoV-2 and Other Pathogens of Community-Acquired Pneumonia by PCR in the Tyumen Region
The aim of this work was to identify the causative agent of community-acquired pneumonia and coinfection using PCR study of biomaterial from patients.Materials and methods. PCR testing of 268 samples from 258 patients was carried out to identify RNA/DNA of viral and bacterial pathogens of respirator...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Language: | Russian |
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Federal Government Health Institution, Russian Research Anti-Plague Institute “Microbe”
2020-10-01
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| Series: | Проблемы особо опасных инфекций |
| Subjects: | |
| Online Access: | https://journal.microbe.ru/jour/article/view/1375 |
| _version_ | 1797220782047232000 |
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| author | I. V. Bakshtanovskaya T. F. Stepanova G. V. Sharukho A. N. Letyushev K. B. Stepanova N. V. Loginova Ts. A. Panina E. A. Zmatrakova A. N. Kosyreva A. Z. Bartusevich S. A. Leont’eva A. O. Vishnyakova |
| author_facet | I. V. Bakshtanovskaya T. F. Stepanova G. V. Sharukho A. N. Letyushev K. B. Stepanova N. V. Loginova Ts. A. Panina E. A. Zmatrakova A. N. Kosyreva A. Z. Bartusevich S. A. Leont’eva A. O. Vishnyakova |
| author_sort | I. V. Bakshtanovskaya |
| collection | DOAJ |
| description | The aim of this work was to identify the causative agent of community-acquired pneumonia and coinfection using PCR study of biomaterial from patients.Materials and methods. PCR testing of 268 samples from 258 patients was carried out to identify RNA/DNA of viral and bacterial pathogens of respiratory infections.Results and discussion. In 43.3 % of samples SARS-CoV-2 RNA was detected, in 4.5 % – RNA/DNA of acute respiratory viral infections pathogens, in one sample – DNA of Mycoplasma pneumoniae. Co-infection was detected only in patients of the anti-tuberculosis dispensary (SARS-CoV-2 and Mycobacterium tuberculosis). In the examined patients with pneumonia, SARS-CoV-2 RNA was significantly more often detected in biomaterial from the lower respiratory tract (52 %) than in respiratory smears (8.5 %). In the first week from the onset of the disease, 19.2 % of positive samples were found, in the second – 56.5 %. |
| first_indexed | 2024-03-08T13:42:00Z |
| format | Article |
| id | doaj.art-1640517323bd4302a9172df145a35e9a |
| institution | Directory Open Access Journal |
| issn | 0370-1069 2658-719X |
| language | Russian |
| last_indexed | 2024-04-24T12:55:00Z |
| publishDate | 2020-10-01 |
| publisher | Federal Government Health Institution, Russian Research Anti-Plague Institute “Microbe” |
| record_format | Article |
| series | Проблемы особо опасных инфекций |
| spelling | doaj.art-1640517323bd4302a9172df145a35e9a2024-04-05T16:47:15ZrusFederal Government Health Institution, Russian Research Anti-Plague Institute “Microbe”Проблемы особо опасных инфекций0370-10692658-719X2020-10-010314614910.21055/0370-1069-2020-3-146-1491233Results of Detecting SARS-CoV-2 and Other Pathogens of Community-Acquired Pneumonia by PCR in the Tyumen RegionI. V. Bakshtanovskaya0T. F. Stepanova1G. V. Sharukho2A. N. Letyushev3K. B. Stepanova4N. V. Loginova5Ts. A. Panina6E. A. Zmatrakova7A. N. Kosyreva8A. Z. Bartusevich9S. A. Leont’eva10A. O. Vishnyakova11Tyumen Research Institute of the Regional Infection PathologyTyumen Research Institute of the Regional Infection PathologyRospotrebnadzor Administration in the Tyumen RegionTyumen Research Institute of the Regional Infection Pathology; Rospotrebnadzor Administration in the Tyumen RegionTyumen Research Institute of the Regional Infection PathologyDepartment of Health of the Tyumen RegionTyumen Research Institute of the Regional Infection PathologyTyumen Research Institute of the Regional Infection PathologyTyumen Research Institute of the Regional Infection PathologyTyumen Research Institute of the Regional Infection PathologyTyumen Research Institute of the Regional Infection PathologyTyumen Research Institute of the Regional Infection PathologyThe aim of this work was to identify the causative agent of community-acquired pneumonia and coinfection using PCR study of biomaterial from patients.Materials and methods. PCR testing of 268 samples from 258 patients was carried out to identify RNA/DNA of viral and bacterial pathogens of respiratory infections.Results and discussion. In 43.3 % of samples SARS-CoV-2 RNA was detected, in 4.5 % – RNA/DNA of acute respiratory viral infections pathogens, in one sample – DNA of Mycoplasma pneumoniae. Co-infection was detected only in patients of the anti-tuberculosis dispensary (SARS-CoV-2 and Mycobacterium tuberculosis). In the examined patients with pneumonia, SARS-CoV-2 RNA was significantly more often detected in biomaterial from the lower respiratory tract (52 %) than in respiratory smears (8.5 %). In the first week from the onset of the disease, 19.2 % of positive samples were found, in the second – 56.5 %.https://journal.microbe.ru/jour/article/view/1375pneumoniapcrsars-cov-2co-infections |
| spellingShingle | I. V. Bakshtanovskaya T. F. Stepanova G. V. Sharukho A. N. Letyushev K. B. Stepanova N. V. Loginova Ts. A. Panina E. A. Zmatrakova A. N. Kosyreva A. Z. Bartusevich S. A. Leont’eva A. O. Vishnyakova Results of Detecting SARS-CoV-2 and Other Pathogens of Community-Acquired Pneumonia by PCR in the Tyumen Region Проблемы особо опасных инфекций pneumonia pcr sars-cov-2 co-infections |
| title | Results of Detecting SARS-CoV-2 and Other Pathogens of Community-Acquired Pneumonia by PCR in the Tyumen Region |
| title_full | Results of Detecting SARS-CoV-2 and Other Pathogens of Community-Acquired Pneumonia by PCR in the Tyumen Region |
| title_fullStr | Results of Detecting SARS-CoV-2 and Other Pathogens of Community-Acquired Pneumonia by PCR in the Tyumen Region |
| title_full_unstemmed | Results of Detecting SARS-CoV-2 and Other Pathogens of Community-Acquired Pneumonia by PCR in the Tyumen Region |
| title_short | Results of Detecting SARS-CoV-2 and Other Pathogens of Community-Acquired Pneumonia by PCR in the Tyumen Region |
| title_sort | results of detecting sars cov 2 and other pathogens of community acquired pneumonia by pcr in the tyumen region |
| topic | pneumonia pcr sars-cov-2 co-infections |
| url | https://journal.microbe.ru/jour/article/view/1375 |
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