Isolation, characterization, and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteria
Abstract Background The present study dealt with the screening of soil bacteria with antibacterial activity from different locations in Bangalore, India. Antibiotics play the role of self-defense mechanism for the bacteria and are produced as secondary metabolites to protect themselves from other co...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2021-08-01
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| Series: | Journal of Genetic Engineering and Biotechnology |
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| Online Access: | https://doi.org/10.1186/s43141-021-00219-x |
| _version_ | 1827279567132295168 |
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| author | R. Prashanthi Shreevatsa G.K. Krupalini S. Manoj L. |
| author_facet | R. Prashanthi Shreevatsa G.K. Krupalini S. Manoj L. |
| author_sort | R. Prashanthi |
| collection | DOAJ |
| description | Abstract Background The present study dealt with the screening of soil bacteria with antibacterial activity from different locations in Bangalore, India. Antibiotics play the role of self-defense mechanism for the bacteria and are produced as secondary metabolites to protect themselves from other competitive microorganisms. The need for new antibiotics arose as the pathogenic bacteria acquire resistance to various antibiotics meant for treating human diseases. Given the importance of antibiotics of bacterial origin, standard techniques have been used to isolate and characterize the soil bacteria which showed antibacterial activity. Results The isolated bacteria were tested against human pathogenic bacteria like Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, and Klebsiella pneumoniae by primary and secondary screening methods. The isolates PR1, PR2, and PR3 were confirmed to have antibacterial activity against S. aureus, E. coli, P. aeruginosa, and K. pneumoniae by both methods. Studies on the effect of filter sterilization, autoclaving, and proteinase K treatment on culture filtrates showed filter sterilization as the best method. The effect of different carbon and nitrogen sources on the antibacterial activity showed that preference by each isolate differed for carbon and nitrogen requirements. The isolates PR1, PR2, and PR3 were identified as Bacillus aryabhattai strain PR-D07, Arthrobacter humicola strain PR-F07, and Neomicrococcus lactis strain PR-F11 through 16S rRNA sequencing. Conclusion Findings from this research work are encouraging and could proceed further to applied aspects. Only 3 bacterial isolates out of 263 isolates from soil samples displayed antibacterial activity against human pathogens S. aureus, E. coli, P. aeruginosa, and K. pneumoniae. They were identified as B. aryabhattai, A. humicola, and N. lactis by 16S rRNA studies and all of them are Gram-positive. Each isolate preferred different carbon and nitrogen sources for their enhanced antibacterial activity. Efficacy of the culture filtrates of these isolates was tested by filter sterilization, autoclaving, and proteinase K treatment. Filter-sterilized culture filtrates showed higher antibacterial activity than other treatments. A comparison of the antibacterial activity of culture filtrates and antibiotic streptomycin produced an inhibition zone of 18.5 mm and 15.5 mm respectively. This is the first report on the antibacterial activity of all the 3 bacterial strains (B. aryabhattai strain PR-D07, A. humicola strain PR-F07, and N. lactis strain PR-F11), against all the human pathogens, mentioned earlier. It is also found that the antibiotic factor is proteinaceous as proteinase K considerably reduced the antibacterial activity of the culture filtrates. With the above significant results, these 3 bacteria are considered to be promising candidates for the isolation of new antibacterial agents. |
| first_indexed | 2024-04-24T08:22:11Z |
| format | Article |
| id | doaj.art-1650efe9039442b88ae1c0e50f091f7b |
| institution | Directory Open Access Journal |
| issn | 2090-5920 |
| language | English |
| last_indexed | 2024-04-24T08:22:11Z |
| publishDate | 2021-08-01 |
| publisher | Elsevier |
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| series | Journal of Genetic Engineering and Biotechnology |
| spelling | doaj.art-1650efe9039442b88ae1c0e50f091f7b2024-04-17T00:27:17ZengElsevierJournal of Genetic Engineering and Biotechnology2090-59202021-08-0119111410.1186/s43141-021-00219-xIsolation, characterization, and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteriaR. Prashanthi0Shreevatsa G.K.1Krupalini S.2Manoj L.3Department of Biotechnology and Genetics, M. S. Ramaiah College of Arts, Science and CommerceDepartment of Biotechnology and Genetics, M. S. Ramaiah College of Arts, Science and CommerceDepartment of Biotechnology and Genetics, M. S. Ramaiah College of Arts, Science and CommerceDepartment of Biotechnology and Genetics, M. S. Ramaiah College of Arts, Science and CommerceAbstract Background The present study dealt with the screening of soil bacteria with antibacterial activity from different locations in Bangalore, India. Antibiotics play the role of self-defense mechanism for the bacteria and are produced as secondary metabolites to protect themselves from other competitive microorganisms. The need for new antibiotics arose as the pathogenic bacteria acquire resistance to various antibiotics meant for treating human diseases. Given the importance of antibiotics of bacterial origin, standard techniques have been used to isolate and characterize the soil bacteria which showed antibacterial activity. Results The isolated bacteria were tested against human pathogenic bacteria like Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, and Klebsiella pneumoniae by primary and secondary screening methods. The isolates PR1, PR2, and PR3 were confirmed to have antibacterial activity against S. aureus, E. coli, P. aeruginosa, and K. pneumoniae by both methods. Studies on the effect of filter sterilization, autoclaving, and proteinase K treatment on culture filtrates showed filter sterilization as the best method. The effect of different carbon and nitrogen sources on the antibacterial activity showed that preference by each isolate differed for carbon and nitrogen requirements. The isolates PR1, PR2, and PR3 were identified as Bacillus aryabhattai strain PR-D07, Arthrobacter humicola strain PR-F07, and Neomicrococcus lactis strain PR-F11 through 16S rRNA sequencing. Conclusion Findings from this research work are encouraging and could proceed further to applied aspects. Only 3 bacterial isolates out of 263 isolates from soil samples displayed antibacterial activity against human pathogens S. aureus, E. coli, P. aeruginosa, and K. pneumoniae. They were identified as B. aryabhattai, A. humicola, and N. lactis by 16S rRNA studies and all of them are Gram-positive. Each isolate preferred different carbon and nitrogen sources for their enhanced antibacterial activity. Efficacy of the culture filtrates of these isolates was tested by filter sterilization, autoclaving, and proteinase K treatment. Filter-sterilized culture filtrates showed higher antibacterial activity than other treatments. A comparison of the antibacterial activity of culture filtrates and antibiotic streptomycin produced an inhibition zone of 18.5 mm and 15.5 mm respectively. This is the first report on the antibacterial activity of all the 3 bacterial strains (B. aryabhattai strain PR-D07, A. humicola strain PR-F07, and N. lactis strain PR-F11), against all the human pathogens, mentioned earlier. It is also found that the antibiotic factor is proteinaceous as proteinase K considerably reduced the antibacterial activity of the culture filtrates. With the above significant results, these 3 bacteria are considered to be promising candidates for the isolation of new antibacterial agents.https://doi.org/10.1186/s43141-021-00219-xSoil bacterial communities16S rRNA sequencingAntagonistic activity |
| spellingShingle | R. Prashanthi Shreevatsa G.K. Krupalini S. Manoj L. Isolation, characterization, and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteria Journal of Genetic Engineering and Biotechnology Soil bacterial communities 16S rRNA sequencing Antagonistic activity |
| title | Isolation, characterization, and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteria |
| title_full | Isolation, characterization, and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteria |
| title_fullStr | Isolation, characterization, and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteria |
| title_full_unstemmed | Isolation, characterization, and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteria |
| title_short | Isolation, characterization, and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteria |
| title_sort | isolation characterization and molecular identification of soil bacteria showing antibacterial activity against human pathogenic bacteria |
| topic | Soil bacterial communities 16S rRNA sequencing Antagonistic activity |
| url | https://doi.org/10.1186/s43141-021-00219-x |
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