The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 [version 1; peer review: 2 approved]
We present a genome assembly from an individual male Arvicola amphibius (the European water vole; Chordata; Mammalia; Rodentia; Cricetidae). The genome sequence is 2.30 gigabases in span. The majority of the assembly is scaffolded into 18 chromosomal pseudomolecules, including the X sex chromosome....
| Main Authors: | , , , , , , , , , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Wellcome
2021-06-01
|
| Series: | Wellcome Open Research |
| Subjects: | |
| Online Access: | https://wellcomeopenresearch.org/articles/6-162/v1 |
| _version_ | 1811246609930911744 |
|---|---|
| author | Michael A. Quail James Torrance Ying Sims Richard Challis Sarah Pelan Mark Blaxter Daniel Mead Marcela Uliano Da Silva Angus I. Carpenter Craig Corton Michelle Smith Francesca Floriana Tricomi Jason Skelton Karen Oliver Emma Betteridge Jale Doulcan Shane A. McCarthy Jonathan Wood Jonathan Threlfall Kerstin Howe |
| author_facet | Michael A. Quail James Torrance Ying Sims Richard Challis Sarah Pelan Mark Blaxter Daniel Mead Marcela Uliano Da Silva Angus I. Carpenter Craig Corton Michelle Smith Francesca Floriana Tricomi Jason Skelton Karen Oliver Emma Betteridge Jale Doulcan Shane A. McCarthy Jonathan Wood Jonathan Threlfall Kerstin Howe |
| author_sort | Michael A. Quail |
| collection | DOAJ |
| description | We present a genome assembly from an individual male Arvicola amphibius (the European water vole; Chordata; Mammalia; Rodentia; Cricetidae). The genome sequence is 2.30 gigabases in span. The majority of the assembly is scaffolded into 18 chromosomal pseudomolecules, including the X sex chromosome. Gene annotation of this assembly on Ensembl has identified 21,394 protein coding genes. |
| first_indexed | 2024-04-12T14:55:53Z |
| format | Article |
| id | doaj.art-16a40bc428f64614987146163980b836 |
| institution | Directory Open Access Journal |
| issn | 2398-502X |
| language | English |
| last_indexed | 2024-04-12T14:55:53Z |
| publishDate | 2021-06-01 |
| publisher | Wellcome |
| record_format | Article |
| series | Wellcome Open Research |
| spelling | doaj.art-16a40bc428f64614987146163980b8362022-12-22T03:28:14ZengWellcomeWellcome Open Research2398-502X2021-06-01618475The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 [version 1; peer review: 2 approved]Michael A. Quail0James Torrance1https://orcid.org/0000-0002-6117-8190Ying Sims2Richard Challis3https://orcid.org/0000-0002-3502-1122Sarah Pelan4Mark Blaxter5https://orcid.org/0000-0003-2861-949XDaniel Mead6https://orcid.org/0000-0001-7717-4330Marcela Uliano Da Silva7Angus I. Carpenter8https://orcid.org/0000-0002-0262-9895Craig Corton9Michelle Smith10Francesca Floriana Tricomi11https://orcid.org/0000-0002-6170-5499Jason Skelton12Karen Oliver13Emma Betteridge14Jale Doulcan15https://orcid.org/0000-0002-3551-1770Shane A. McCarthy16Jonathan Wood17https://orcid.org/0000-0002-7545-2162Jonathan Threlfall18https://orcid.org/0000-0001-8599-4320Kerstin Howe19https://orcid.org/0000-0003-2237-513XWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKNottingham Trent University, Nottingham, NG1 4FQ, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKEMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UKWe present a genome assembly from an individual male Arvicola amphibius (the European water vole; Chordata; Mammalia; Rodentia; Cricetidae). The genome sequence is 2.30 gigabases in span. The majority of the assembly is scaffolded into 18 chromosomal pseudomolecules, including the X sex chromosome. Gene annotation of this assembly on Ensembl has identified 21,394 protein coding genes.https://wellcomeopenresearch.org/articles/6-162/v1Arvicola amphibius European water vole genome sequence chromosomaleng |
| spellingShingle | Michael A. Quail James Torrance Ying Sims Richard Challis Sarah Pelan Mark Blaxter Daniel Mead Marcela Uliano Da Silva Angus I. Carpenter Craig Corton Michelle Smith Francesca Floriana Tricomi Jason Skelton Karen Oliver Emma Betteridge Jale Doulcan Shane A. McCarthy Jonathan Wood Jonathan Threlfall Kerstin Howe The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 [version 1; peer review: 2 approved] Wellcome Open Research Arvicola amphibius European water vole genome sequence chromosomal eng |
| title | The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 [version 1; peer review: 2 approved] |
| title_full | The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 [version 1; peer review: 2 approved] |
| title_fullStr | The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 [version 1; peer review: 2 approved] |
| title_full_unstemmed | The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 [version 1; peer review: 2 approved] |
| title_short | The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758 [version 1; peer review: 2 approved] |
| title_sort | genome sequence of the european water vole arvicola amphibius linnaeus 1758 version 1 peer review 2 approved |
| topic | Arvicola amphibius European water vole genome sequence chromosomal eng |
| url | https://wellcomeopenresearch.org/articles/6-162/v1 |
| work_keys_str_mv | AT michaelaquail thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jamestorrance thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT yingsims thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT richardchallis thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT sarahpelan thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT markblaxter thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT danielmead thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT marcelaulianodasilva thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT angusicarpenter thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT craigcorton thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT michellesmith thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT francescaflorianatricomi thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jasonskelton thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT karenoliver thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT emmabetteridge thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jaledoulcan thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT shaneamccarthy thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jonathanwood thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jonathanthrelfall thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT kerstinhowe thegenomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT michaelaquail genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jamestorrance genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT yingsims genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT richardchallis genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT sarahpelan genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT markblaxter genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT danielmead genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT marcelaulianodasilva genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT angusicarpenter genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT craigcorton genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT michellesmith genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT francescaflorianatricomi genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jasonskelton genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT karenoliver genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT emmabetteridge genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jaledoulcan genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT shaneamccarthy genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jonathanwood genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT jonathanthrelfall genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved AT kerstinhowe genomesequenceoftheeuropeanwatervolearvicolaamphibiuslinnaeus1758version1peerreview2approved |