Simultaneous CAS9 editing of cpSRP43, LHCA6, and LHCA7 in Picochlorum celeri lowers chlorophyll levels and improves biomass productivity

Abstract High cellular pigment levels in dense microalgal cultures contribute to excess light absorption. To improve photosynthetic yields in the marine microalga Picochlorum celeri, CAS9 gene editing was used to target the molecular chaperone cpSRP43. Depigmented strains (>50% lower chlorophyll)...

Full description

Bibliographic Details
Main Authors: Anagha Krishnan, Melissa Cano, Devin A. Karns, Tyson A. Burch, Maria Likhogrud, Moena Aqui, Shaun Bailey, John Verruto, William Lambert, Fedor Kuzminov, Mahva Naghipor, Yingjun Wang, Christopher C. Ebmeier, Joseph C. Weissman, Matthew C. Posewitz
Format: Article
Language:English
Published: Wiley 2023-09-01
Series:Plant Direct
Subjects:
Online Access:https://doi.org/10.1002/pld3.530
_version_ 1797629635916201984
author Anagha Krishnan
Melissa Cano
Devin A. Karns
Tyson A. Burch
Maria Likhogrud
Moena Aqui
Shaun Bailey
John Verruto
William Lambert
Fedor Kuzminov
Mahva Naghipor
Yingjun Wang
Christopher C. Ebmeier
Joseph C. Weissman
Matthew C. Posewitz
author_facet Anagha Krishnan
Melissa Cano
Devin A. Karns
Tyson A. Burch
Maria Likhogrud
Moena Aqui
Shaun Bailey
John Verruto
William Lambert
Fedor Kuzminov
Mahva Naghipor
Yingjun Wang
Christopher C. Ebmeier
Joseph C. Weissman
Matthew C. Posewitz
author_sort Anagha Krishnan
collection DOAJ
description Abstract High cellular pigment levels in dense microalgal cultures contribute to excess light absorption. To improve photosynthetic yields in the marine microalga Picochlorum celeri, CAS9 gene editing was used to target the molecular chaperone cpSRP43. Depigmented strains (>50% lower chlorophyll) were generated, with proteomics showing attenuated levels of most light harvesting complex (LHC) proteins. Gene editing generated two types of cpSRP43 transformants with distinct lower pigment phenotypes: (i) a transformant (Δsrp43) with both cpSRP43 diploid alleles modified to encode non‐functional polypeptides and (ii) a transformant (STR30309) with a 3 nt in‐frame insertion in one allele at the CAS9 cut site (non‐functional second allele), leading to expression of a modified cpSRP43. STR30309 has more chlorophyll than Δsrp43 but substantially less than wild type. To further decrease light absorption by photosystem I in STR30309, CAS9 editing was used to stack in disruptions of both LHCA6 and LHCA7 to generate STR30843, which has higher (5–24%) productivities relative to wild type in solar‐simulating bioreactors. Maximal productivities required frequent partial harvests throughout the day. For STR30843, exemplary diel bioreactor yields of ~50 g m−2 day−1 were attained. Our results demonstrate diel productivity gains in P. celeri by lowering pigment levels.
first_indexed 2024-03-11T10:55:54Z
format Article
id doaj.art-16c0af3cc9f64dcc8aea3d57de705432
institution Directory Open Access Journal
issn 2475-4455
language English
last_indexed 2024-03-11T10:55:54Z
publishDate 2023-09-01
publisher Wiley
record_format Article
series Plant Direct
spelling doaj.art-16c0af3cc9f64dcc8aea3d57de7054322023-11-13T07:55:56ZengWileyPlant Direct2475-44552023-09-0179n/an/a10.1002/pld3.530Simultaneous CAS9 editing of cpSRP43, LHCA6, and LHCA7 in Picochlorum celeri lowers chlorophyll levels and improves biomass productivityAnagha Krishnan0Melissa Cano1Devin A. Karns2Tyson A. Burch3Maria Likhogrud4Moena Aqui5Shaun Bailey6John Verruto7William Lambert8Fedor Kuzminov9Mahva Naghipor10Yingjun Wang11Christopher C. Ebmeier12Joseph C. Weissman13Matthew C. Posewitz14Department of Chemistry Colorado School of Mines Golden Colorado USADepartment of Chemistry Colorado School of Mines Golden Colorado USADepartment of Chemistry Colorado School of Mines Golden Colorado USADepartment of Chemistry Colorado School of Mines Golden Colorado USAExxonMobil Technology and Engineering Company Annandale New Jersey USAViridos La Jolla California USAViridos La Jolla California USAViridos La Jolla California USAViridos La Jolla California USAViridos La Jolla California USAViridos La Jolla California USAViridos La Jolla California USADepartment of Chemistry and Biochemistry University of Colorado Boulder Colorado USAExxonMobil Technology and Engineering Company Annandale New Jersey USADepartment of Chemistry Colorado School of Mines Golden Colorado USAAbstract High cellular pigment levels in dense microalgal cultures contribute to excess light absorption. To improve photosynthetic yields in the marine microalga Picochlorum celeri, CAS9 gene editing was used to target the molecular chaperone cpSRP43. Depigmented strains (>50% lower chlorophyll) were generated, with proteomics showing attenuated levels of most light harvesting complex (LHC) proteins. Gene editing generated two types of cpSRP43 transformants with distinct lower pigment phenotypes: (i) a transformant (Δsrp43) with both cpSRP43 diploid alleles modified to encode non‐functional polypeptides and (ii) a transformant (STR30309) with a 3 nt in‐frame insertion in one allele at the CAS9 cut site (non‐functional second allele), leading to expression of a modified cpSRP43. STR30309 has more chlorophyll than Δsrp43 but substantially less than wild type. To further decrease light absorption by photosystem I in STR30309, CAS9 editing was used to stack in disruptions of both LHCA6 and LHCA7 to generate STR30843, which has higher (5–24%) productivities relative to wild type in solar‐simulating bioreactors. Maximal productivities required frequent partial harvests throughout the day. For STR30843, exemplary diel bioreactor yields of ~50 g m−2 day−1 were attained. Our results demonstrate diel productivity gains in P. celeri by lowering pigment levels.https://doi.org/10.1002/pld3.530biomass productivityCAS9 editingcpSRP43photosynthetic efficiencyPicochlorum celeri
spellingShingle Anagha Krishnan
Melissa Cano
Devin A. Karns
Tyson A. Burch
Maria Likhogrud
Moena Aqui
Shaun Bailey
John Verruto
William Lambert
Fedor Kuzminov
Mahva Naghipor
Yingjun Wang
Christopher C. Ebmeier
Joseph C. Weissman
Matthew C. Posewitz
Simultaneous CAS9 editing of cpSRP43, LHCA6, and LHCA7 in Picochlorum celeri lowers chlorophyll levels and improves biomass productivity
Plant Direct
biomass productivity
CAS9 editing
cpSRP43
photosynthetic efficiency
Picochlorum celeri
title Simultaneous CAS9 editing of cpSRP43, LHCA6, and LHCA7 in Picochlorum celeri lowers chlorophyll levels and improves biomass productivity
title_full Simultaneous CAS9 editing of cpSRP43, LHCA6, and LHCA7 in Picochlorum celeri lowers chlorophyll levels and improves biomass productivity
title_fullStr Simultaneous CAS9 editing of cpSRP43, LHCA6, and LHCA7 in Picochlorum celeri lowers chlorophyll levels and improves biomass productivity
title_full_unstemmed Simultaneous CAS9 editing of cpSRP43, LHCA6, and LHCA7 in Picochlorum celeri lowers chlorophyll levels and improves biomass productivity
title_short Simultaneous CAS9 editing of cpSRP43, LHCA6, and LHCA7 in Picochlorum celeri lowers chlorophyll levels and improves biomass productivity
title_sort simultaneous cas9 editing of cpsrp43 lhca6 and lhca7 in picochlorum celeri lowers chlorophyll levels and improves biomass productivity
topic biomass productivity
CAS9 editing
cpSRP43
photosynthetic efficiency
Picochlorum celeri
url https://doi.org/10.1002/pld3.530
work_keys_str_mv AT anaghakrishnan simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT melissacano simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT devinakarns simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT tysonaburch simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT marialikhogrud simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT moenaaqui simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT shaunbailey simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT johnverruto simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT williamlambert simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT fedorkuzminov simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT mahvanaghipor simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT yingjunwang simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT christophercebmeier simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT josephcweissman simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity
AT matthewcposewitz simultaneouscas9editingofcpsrp43lhca6andlhca7inpicochlorumcelerilowerschlorophylllevelsandimprovesbiomassproductivity