The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy

HIV-1 persists in a latent reservoir in resting CD4+ T cells despite antiretroviral therapy (ART). The reservoir decays slowly over the first 7 years of ART (t1/2 = 44 months). However, whether decay continues with long-term ART is unclear. Recent integration site studies indicate gradual selection...

Full description

Bibliographic Details
Main Authors: Natalie F. McMyn, Joseph Varriale, Emily J. Fray, Carolin Zitzmann, Hannah MacLeod, Jun Lai, Anushka Singhal, Milica Moskovljevic, Mauro A. Garcia, Brianna M. Lopez, Vivek Hariharan, Kyle Rhodehouse, Kenneth Lynn, Pablo Tebas, Karam Mounzer, Luis J. Montaner, Erika Benko, Colin Kovacs, Rebecca Hoh, Francesco R. Simonetti, Gregory M. Laird, Steven G. Deeks, Ruy M. Ribeiro, Alan S. Perelson, Robert F. Siliciano, Janet M. Siliciano
Format: Article
Language:English
Published: American Society for Clinical Investigation 2023-09-01
Series:The Journal of Clinical Investigation
Subjects:
Online Access:https://doi.org/10.1172/JCI171554
_version_ 1797634410959339520
author Natalie F. McMyn
Joseph Varriale
Emily J. Fray
Carolin Zitzmann
Hannah MacLeod
Jun Lai
Anushka Singhal
Milica Moskovljevic
Mauro A. Garcia
Brianna M. Lopez
Vivek Hariharan
Kyle Rhodehouse
Kenneth Lynn
Pablo Tebas
Karam Mounzer
Luis J. Montaner
Erika Benko
Colin Kovacs
Rebecca Hoh
Francesco R. Simonetti
Gregory M. Laird
Steven G. Deeks
Ruy M. Ribeiro
Alan S. Perelson
Robert F. Siliciano
Janet M. Siliciano
author_facet Natalie F. McMyn
Joseph Varriale
Emily J. Fray
Carolin Zitzmann
Hannah MacLeod
Jun Lai
Anushka Singhal
Milica Moskovljevic
Mauro A. Garcia
Brianna M. Lopez
Vivek Hariharan
Kyle Rhodehouse
Kenneth Lynn
Pablo Tebas
Karam Mounzer
Luis J. Montaner
Erika Benko
Colin Kovacs
Rebecca Hoh
Francesco R. Simonetti
Gregory M. Laird
Steven G. Deeks
Ruy M. Ribeiro
Alan S. Perelson
Robert F. Siliciano
Janet M. Siliciano
author_sort Natalie F. McMyn
collection DOAJ
description HIV-1 persists in a latent reservoir in resting CD4+ T cells despite antiretroviral therapy (ART). The reservoir decays slowly over the first 7 years of ART (t1/2 = 44 months). However, whether decay continues with long-term ART is unclear. Recent integration site studies indicate gradual selection against inducible, intact proviruses, raising speculation that decades of ART might allow treatment interruption without viral rebound. Therefore, we measured the reservoir in 42 people on long-term ART (mean 22 years) using a quantitative viral outgrowth assay. After 7 years of ART, there was no long-term decrease in the frequency of inducible, replication-competent proviruses but rather an increase with an estimated doubling time of 23 years. Another reservoir assay, the intact proviral DNA assay, confirmed that reservoir decay with t1/2 of 44 months did not continue with long-term ART. The lack of decay reflected proliferation of infected cells. Most inducible, replication-competent viruses (79.8%) had env sequences identical to those of other isolates from the same sample. Thus, although integration site analysis indicates changes in reservoir composition, the proliferation of CD4+ T cells counteracts decay, maintaining the frequency of inducible, replication-competent proviruses at roughly constant levels over the long term. These results reinforce the need for lifelong ART.
first_indexed 2024-03-11T12:07:17Z
format Article
id doaj.art-16cb14484f3b4a688aeb5fd64cf309ef
institution Directory Open Access Journal
issn 1558-8238
language English
last_indexed 2024-03-11T12:07:17Z
publishDate 2023-09-01
publisher American Society for Clinical Investigation
record_format Article
series The Journal of Clinical Investigation
spelling doaj.art-16cb14484f3b4a688aeb5fd64cf309ef2023-11-07T16:20:46ZengAmerican Society for Clinical InvestigationThe Journal of Clinical Investigation1558-82382023-09-0113317The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapyNatalie F. McMynJoseph VarrialeEmily J. FrayCarolin ZitzmannHannah MacLeodJun LaiAnushka SinghalMilica MoskovljevicMauro A. GarciaBrianna M. LopezVivek HariharanKyle RhodehouseKenneth LynnPablo TebasKaram MounzerLuis J. MontanerErika BenkoColin KovacsRebecca HohFrancesco R. SimonettiGregory M. LairdSteven G. DeeksRuy M. RibeiroAlan S. PerelsonRobert F. SilicianoJanet M. SilicianoHIV-1 persists in a latent reservoir in resting CD4+ T cells despite antiretroviral therapy (ART). The reservoir decays slowly over the first 7 years of ART (t1/2 = 44 months). However, whether decay continues with long-term ART is unclear. Recent integration site studies indicate gradual selection against inducible, intact proviruses, raising speculation that decades of ART might allow treatment interruption without viral rebound. Therefore, we measured the reservoir in 42 people on long-term ART (mean 22 years) using a quantitative viral outgrowth assay. After 7 years of ART, there was no long-term decrease in the frequency of inducible, replication-competent proviruses but rather an increase with an estimated doubling time of 23 years. Another reservoir assay, the intact proviral DNA assay, confirmed that reservoir decay with t1/2 of 44 months did not continue with long-term ART. The lack of decay reflected proliferation of infected cells. Most inducible, replication-competent viruses (79.8%) had env sequences identical to those of other isolates from the same sample. Thus, although integration site analysis indicates changes in reservoir composition, the proliferation of CD4+ T cells counteracts decay, maintaining the frequency of inducible, replication-competent proviruses at roughly constant levels over the long term. These results reinforce the need for lifelong ART.https://doi.org/10.1172/JCI171554AIDS/HIVVirology
spellingShingle Natalie F. McMyn
Joseph Varriale
Emily J. Fray
Carolin Zitzmann
Hannah MacLeod
Jun Lai
Anushka Singhal
Milica Moskovljevic
Mauro A. Garcia
Brianna M. Lopez
Vivek Hariharan
Kyle Rhodehouse
Kenneth Lynn
Pablo Tebas
Karam Mounzer
Luis J. Montaner
Erika Benko
Colin Kovacs
Rebecca Hoh
Francesco R. Simonetti
Gregory M. Laird
Steven G. Deeks
Ruy M. Ribeiro
Alan S. Perelson
Robert F. Siliciano
Janet M. Siliciano
The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy
The Journal of Clinical Investigation
AIDS/HIV
Virology
title The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy
title_full The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy
title_fullStr The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy
title_full_unstemmed The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy
title_short The latent reservoir of inducible, infectious HIV-1 does not decrease despite decades of antiretroviral therapy
title_sort latent reservoir of inducible infectious hiv 1 does not decrease despite decades of antiretroviral therapy
topic AIDS/HIV
Virology
url https://doi.org/10.1172/JCI171554
work_keys_str_mv AT nataliefmcmyn thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT josephvarriale thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT emilyjfray thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT carolinzitzmann thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT hannahmacleod thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT junlai thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT anushkasinghal thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT milicamoskovljevic thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT mauroagarcia thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT briannamlopez thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT vivekhariharan thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT kylerhodehouse thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT kennethlynn thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT pablotebas thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT karammounzer thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT luisjmontaner thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT erikabenko thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT colinkovacs thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT rebeccahoh thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT francescorsimonetti thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT gregorymlaird thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT stevengdeeks thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT ruymribeiro thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT alansperelson thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT robertfsiliciano thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT janetmsiliciano thelatentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT nataliefmcmyn latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT josephvarriale latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT emilyjfray latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT carolinzitzmann latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT hannahmacleod latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT junlai latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT anushkasinghal latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT milicamoskovljevic latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT mauroagarcia latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT briannamlopez latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT vivekhariharan latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT kylerhodehouse latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT kennethlynn latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT pablotebas latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT karammounzer latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT luisjmontaner latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT erikabenko latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT colinkovacs latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT rebeccahoh latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT francescorsimonetti latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT gregorymlaird latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT stevengdeeks latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT ruymribeiro latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT alansperelson latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT robertfsiliciano latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy
AT janetmsiliciano latentreservoirofinducibleinfectioushiv1doesnotdecreasedespitedecadesofantiretroviraltherapy