The complete chloroplast genome sequence of Lilium speciosum Var. gloriosoides, an important breeding parent
Lilium speciosum var. gloriosoides is an important breeding parent with high ornamental and edible value in worldwide. In this study, we reported a complete chloroplast genome of L. speciosum var. gloriosoides, which was de novo assembled using the next-generation sequencing data. The whole genome i...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1696245 |
| _version_ | 1797639543467278336 |
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| author | Yixin Liu Jie Huang The Su Moe Mohammad Sayyar Khan Jing Xue Xiuhai Zhang Yunpeng Du |
| author_facet | Yixin Liu Jie Huang The Su Moe Mohammad Sayyar Khan Jing Xue Xiuhai Zhang Yunpeng Du |
| author_sort | Yixin Liu |
| collection | DOAJ |
| description | Lilium speciosum var. gloriosoides is an important breeding parent with high ornamental and edible value in worldwide. In this study, we reported a complete chloroplast genome of L. speciosum var. gloriosoides, which was de novo assembled using the next-generation sequencing data. The whole genome is 152,912 bp in length and includes one large single copy (LSC) region of 70,693 bp, one small single copy (SSC) region of 17,517 bp, and a pair of inverted repeat (IR) region of 26,539 bp. A total of 131 functional genes were encoded, consisting of 76 protein-coding genes, 36 transfer RNA genes, and eight ribosomal RNA genes. The overall AT content of the chloroplast genome is 63.00%. In the maximum likelihood, a strong phylogenetic signal showed that L. speciosum var. gloriosoides is a species of Lilium, which is the first major genome in section Archelirion. |
| first_indexed | 2024-03-11T13:18:13Z |
| format | Article |
| id | doaj.art-177135ba0df0475cb04a7bcbc86214ae |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:13Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-177135ba0df0475cb04a7bcbc86214ae2023-11-03T10:38:53ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-0151717210.1080/23802359.2019.16962451696245The complete chloroplast genome sequence of Lilium speciosum Var. gloriosoides, an important breeding parentYixin Liu0Jie Huang1The Su Moe2Mohammad Sayyar Khan3Jing Xue4Xiuhai Zhang5Yunpeng Du6Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Functional Flower Engineering Technology Research Center, Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry SciencesDivision for Achievements Transformation and Promotion, Beijing Academy of Agriculture and Forestry SciencesBiotechnology Research Department, Ministry of Education, Mandalay Division, Pharmaceutical Research LaboratoryGenomics and Bioinformatics Laboratory, Institute of Biotechnology and Genetic Engineering (IBGE), Faculty of Crop Production Sciences, University of AgricultureBeijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Functional Flower Engineering Technology Research Center, Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry SciencesBeijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Functional Flower Engineering Technology Research Center, Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry SciencesBeijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Functional Flower Engineering Technology Research Center, Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry SciencesLilium speciosum var. gloriosoides is an important breeding parent with high ornamental and edible value in worldwide. In this study, we reported a complete chloroplast genome of L. speciosum var. gloriosoides, which was de novo assembled using the next-generation sequencing data. The whole genome is 152,912 bp in length and includes one large single copy (LSC) region of 70,693 bp, one small single copy (SSC) region of 17,517 bp, and a pair of inverted repeat (IR) region of 26,539 bp. A total of 131 functional genes were encoded, consisting of 76 protein-coding genes, 36 transfer RNA genes, and eight ribosomal RNA genes. The overall AT content of the chloroplast genome is 63.00%. In the maximum likelihood, a strong phylogenetic signal showed that L. speciosum var. gloriosoides is a species of Lilium, which is the first major genome in section Archelirion.http://dx.doi.org/10.1080/23802359.2019.1696245lilium speciosum var. gloriosoidescomplete chloroplast genomenext generation sequencing chloroplastphylogenetic analysis |
| spellingShingle | Yixin Liu Jie Huang The Su Moe Mohammad Sayyar Khan Jing Xue Xiuhai Zhang Yunpeng Du The complete chloroplast genome sequence of Lilium speciosum Var. gloriosoides, an important breeding parent Mitochondrial DNA. Part B. Resources lilium speciosum var. gloriosoides complete chloroplast genome next generation sequencing chloroplast phylogenetic analysis |
| title | The complete chloroplast genome sequence of Lilium speciosum Var. gloriosoides, an important breeding parent |
| title_full | The complete chloroplast genome sequence of Lilium speciosum Var. gloriosoides, an important breeding parent |
| title_fullStr | The complete chloroplast genome sequence of Lilium speciosum Var. gloriosoides, an important breeding parent |
| title_full_unstemmed | The complete chloroplast genome sequence of Lilium speciosum Var. gloriosoides, an important breeding parent |
| title_short | The complete chloroplast genome sequence of Lilium speciosum Var. gloriosoides, an important breeding parent |
| title_sort | complete chloroplast genome sequence of lilium speciosum var gloriosoides an important breeding parent |
| topic | lilium speciosum var. gloriosoides complete chloroplast genome next generation sequencing chloroplast phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1696245 |
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