SBEToolbox: A Matlab Toolbox for Biological Network Analysis
We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph la...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
| Published: |
SAGE Publishing
2013-01-01
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| Series: | Evolutionary Bioinformatics |
| Online Access: | https://doi.org/10.4137/EBO.S12012 |
| _version_ | 1818454116121182208 |
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| author | Kranti Konganti Gang wang Ence Yang James J. Cai |
| author_facet | Kranti Konganti Gang wang Ence Yang James J. Cai |
| author_sort | Kranti Konganti |
| collection | DOAJ |
| description | We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph layout algorithms. Straightforward implementation and the inclusion of high-level functions allow the functionality to be easily extended or tailored through developing custom plugins. SBEGUI, a menu-driven graphical user interface (GUI) of SBEToolbox, enables easy access to various network and graph algorithms for programmers and non-programmers alike. All source code and sample data are freely available at https://github.com/biocoder/SBEToolbox/releases . |
| first_indexed | 2024-12-14T21:49:46Z |
| format | Article |
| id | doaj.art-1797877344914c779868e5418bd487b1 |
| institution | Directory Open Access Journal |
| issn | 1176-9343 |
| language | English |
| last_indexed | 2024-12-14T21:49:46Z |
| publishDate | 2013-01-01 |
| publisher | SAGE Publishing |
| record_format | Article |
| series | Evolutionary Bioinformatics |
| spelling | doaj.art-1797877344914c779868e5418bd487b12022-12-21T22:46:16ZengSAGE PublishingEvolutionary Bioinformatics1176-93432013-01-01910.4137/EBO.S12012SBEToolbox: A Matlab Toolbox for Biological Network AnalysisKranti Konganti0Gang wang1Ence Yang2James J. Cai3Whole Systems Genomics initiative, Texas A&M University, College Station, Texas 77843–4458, USA.Department of veterinary integrative Biosciences, Texas A&M University, College Station, Texas 77843–4458, USA.Department of veterinary integrative Biosciences, Texas A&M University, College Station, Texas 77843–4458, USA.Department of veterinary integrative Biosciences, Texas A&M University, College Station, Texas 77843–4458, USA.We present SBEToolbox (Systems Biology and Evolution Toolbox), an open-source Matlab toolbox for biological network analysis. It takes a network file as input, calculates a variety of centralities and topological metrics, clusters nodes into modules, and displays the network using different graph layout algorithms. Straightforward implementation and the inclusion of high-level functions allow the functionality to be easily extended or tailored through developing custom plugins. SBEGUI, a menu-driven graphical user interface (GUI) of SBEToolbox, enables easy access to various network and graph algorithms for programmers and non-programmers alike. All source code and sample data are freely available at https://github.com/biocoder/SBEToolbox/releases .https://doi.org/10.4137/EBO.S12012 |
| spellingShingle | Kranti Konganti Gang wang Ence Yang James J. Cai SBEToolbox: A Matlab Toolbox for Biological Network Analysis Evolutionary Bioinformatics |
| title | SBEToolbox: A Matlab Toolbox for Biological Network Analysis |
| title_full | SBEToolbox: A Matlab Toolbox for Biological Network Analysis |
| title_fullStr | SBEToolbox: A Matlab Toolbox for Biological Network Analysis |
| title_full_unstemmed | SBEToolbox: A Matlab Toolbox for Biological Network Analysis |
| title_short | SBEToolbox: A Matlab Toolbox for Biological Network Analysis |
| title_sort | sbetoolbox a matlab toolbox for biological network analysis |
| url | https://doi.org/10.4137/EBO.S12012 |
| work_keys_str_mv | AT krantikonganti sbetoolboxamatlabtoolboxforbiologicalnetworkanalysis AT gangwang sbetoolboxamatlabtoolboxforbiologicalnetworkanalysis AT enceyang sbetoolboxamatlabtoolboxforbiologicalnetworkanalysis AT jamesjcai sbetoolboxamatlabtoolboxforbiologicalnetworkanalysis |