The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)
Paphiopedilum purpuratum, an endangered terrestrial orchid distributed in southwestern and south of China. In this study, the complete chloroplast genome (cpDNA) sequence of P. purpuratum was determined from Illumina pair-end sequencing data. With a total length of 158,459 bp in length and includes...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1688106 |
| _version_ | 1797639543916068864 |
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| author | Xian-De Chen Dong-Hui Peng Si-Ren Lan Jun Chen Wen-Qun Fu |
| author_facet | Xian-De Chen Dong-Hui Peng Si-Ren Lan Jun Chen Wen-Qun Fu |
| author_sort | Xian-De Chen |
| collection | DOAJ |
| description | Paphiopedilum purpuratum, an endangered terrestrial orchid distributed in southwestern and south of China. In this study, the complete chloroplast genome (cpDNA) sequence of P. purpuratum was determined from Illumina pair-end sequencing data. With a total length of 158,459 bp in length and includes two inverted repeat regions (IRs) of 34,484 bp each, which were separated by a large single-copy region (LSC) 88,022 bp and a small single-copy region (SSC) 1,469 bp. The chloroplast genome contained 126 genes, including 74 protein conding genes,38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that P. purpuratum, P. dianthum, P. niveum, P. delenatii, and P. armeniacum cluster together, placed them within genus Paphiopedilum. The complete chloroplast genome sequence of P. purpuratum will provide a useful resource for the evolutionary biology study of phylogenetic studies in Orchidaceae. |
| first_indexed | 2024-03-11T13:19:16Z |
| format | Article |
| id | doaj.art-184b7668dc6042c59ad646fa7292c536 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:16Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-184b7668dc6042c59ad646fa7292c5362023-11-03T10:38:51ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423910391110.1080/23802359.2019.16881061688106The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae)Xian-De Chen0Dong-Hui Peng1Si-Ren Lan2Jun Chen3Wen-Qun Fu4Fujian Ornamental Plant Germplasm Resources Innovation and Engineering Application Research CenterFujian Ornamental Plant Germplasm Resources Innovation and Engineering Application Research CenterFujian Ornamental Plant Germplasm Resources Innovation and Engineering Application Research CenterMinnan Normal UniversityMinnan Normal UniversityPaphiopedilum purpuratum, an endangered terrestrial orchid distributed in southwestern and south of China. In this study, the complete chloroplast genome (cpDNA) sequence of P. purpuratum was determined from Illumina pair-end sequencing data. With a total length of 158,459 bp in length and includes two inverted repeat regions (IRs) of 34,484 bp each, which were separated by a large single-copy region (LSC) 88,022 bp and a small single-copy region (SSC) 1,469 bp. The chloroplast genome contained 126 genes, including 74 protein conding genes,38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that P. purpuratum, P. dianthum, P. niveum, P. delenatii, and P. armeniacum cluster together, placed them within genus Paphiopedilum. The complete chloroplast genome sequence of P. purpuratum will provide a useful resource for the evolutionary biology study of phylogenetic studies in Orchidaceae.http://dx.doi.org/10.1080/23802359.2019.1688106chloroplast genomephylogeneticillumina sequencingpaphiopedilum purpuratum |
| spellingShingle | Xian-De Chen Dong-Hui Peng Si-Ren Lan Jun Chen Wen-Qun Fu The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae) Mitochondrial DNA. Part B. Resources chloroplast genome phylogenetic illumina sequencing paphiopedilum purpuratum |
| title | The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae) |
| title_full | The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae) |
| title_fullStr | The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae) |
| title_short | The complete chloroplast genome sequence of Paphiopedilum purpuratum (Orchidaceae) |
| title_sort | complete chloroplast genome sequence of paphiopedilum purpuratum orchidaceae |
| topic | chloroplast genome phylogenetic illumina sequencing paphiopedilum purpuratum |
| url | http://dx.doi.org/10.1080/23802359.2019.1688106 |
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