The complete chloroplast genome of Pholidota imbricata (Orchidaceae)
Pholidota imbricata belongs to tribe Coelogninae in Orchidaceae distributed in Sichuan, Xizang, and Yunnan. Here, we report the first complete chloroplast (cp) genome and the cp genome features of P. imbricata. The complete cp genome sequence of P. imbricata is 159,292 bp in length and presented a t...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1675549 |
| _version_ | 1797639624987770880 |
|---|---|
| author | Wen-Hui Rao Jie Huang Li-Qiang Li Ting-Zhang Li De-Min Kong Jian-Bing Chen |
| author_facet | Wen-Hui Rao Jie Huang Li-Qiang Li Ting-Zhang Li De-Min Kong Jian-Bing Chen |
| author_sort | Wen-Hui Rao |
| collection | DOAJ |
| description | Pholidota imbricata belongs to tribe Coelogninae in Orchidaceae distributed in Sichuan, Xizang, and Yunnan. Here, we report the first complete chloroplast (cp) genome and the cp genome features of P. imbricata. The complete cp genome sequence of P. imbricata is 159,292 bp in length and presented a typical quadripartite structure including one large single-copy region (LSC, 87,515 bp), one small single-copy region (SSC, 20,999 bp), and two inverted repeat regions (IRs, 25,389 bp each). The cp genome encoded 141 genes, of which 108 were unique genes (80 protein-coding genes, 24 tRNAs, and 4 rRNAs). The phylogenetic relationships show that P. imbricata is sister to the species of the genus Pleione in tribe Coelogninae. |
| first_indexed | 2024-03-11T13:19:16Z |
| format | Article |
| id | doaj.art-187b3c2d07ac4036ab1a5992564cab7f |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:16Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-187b3c2d07ac4036ab1a5992564cab7f2023-11-03T10:38:49ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423523352410.1080/23802359.2019.16755491675549The complete chloroplast genome of Pholidota imbricata (Orchidaceae)Wen-Hui Rao0Jie Huang1Li-Qiang Li2Ting-Zhang Li3De-Min Kong4Jian-Bing Chen5Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and UtilizationKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and UtilizationKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and UtilizationKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and UtilizationKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and UtilizationKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and UtilizationPholidota imbricata belongs to tribe Coelogninae in Orchidaceae distributed in Sichuan, Xizang, and Yunnan. Here, we report the first complete chloroplast (cp) genome and the cp genome features of P. imbricata. The complete cp genome sequence of P. imbricata is 159,292 bp in length and presented a typical quadripartite structure including one large single-copy region (LSC, 87,515 bp), one small single-copy region (SSC, 20,999 bp), and two inverted repeat regions (IRs, 25,389 bp each). The cp genome encoded 141 genes, of which 108 were unique genes (80 protein-coding genes, 24 tRNAs, and 4 rRNAs). The phylogenetic relationships show that P. imbricata is sister to the species of the genus Pleione in tribe Coelogninae.http://dx.doi.org/10.1080/23802359.2019.1675549pholidota imbricata;chloroplast genome;phylogeneticcoelogninaeorchidaceae |
| spellingShingle | Wen-Hui Rao Jie Huang Li-Qiang Li Ting-Zhang Li De-Min Kong Jian-Bing Chen The complete chloroplast genome of Pholidota imbricata (Orchidaceae) Mitochondrial DNA. Part B. Resources pholidota imbricata;chloroplast genome;phylogenetic coelogninae orchidaceae |
| title | The complete chloroplast genome of Pholidota imbricata (Orchidaceae) |
| title_full | The complete chloroplast genome of Pholidota imbricata (Orchidaceae) |
| title_fullStr | The complete chloroplast genome of Pholidota imbricata (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome of Pholidota imbricata (Orchidaceae) |
| title_short | The complete chloroplast genome of Pholidota imbricata (Orchidaceae) |
| title_sort | complete chloroplast genome of pholidota imbricata orchidaceae |
| topic | pholidota imbricata;chloroplast genome;phylogenetic coelogninae orchidaceae |
| url | http://dx.doi.org/10.1080/23802359.2019.1675549 |
| work_keys_str_mv | AT wenhuirao thecompletechloroplastgenomeofpholidotaimbricataorchidaceae AT jiehuang thecompletechloroplastgenomeofpholidotaimbricataorchidaceae AT liqiangli thecompletechloroplastgenomeofpholidotaimbricataorchidaceae AT tingzhangli thecompletechloroplastgenomeofpholidotaimbricataorchidaceae AT deminkong thecompletechloroplastgenomeofpholidotaimbricataorchidaceae AT jianbingchen thecompletechloroplastgenomeofpholidotaimbricataorchidaceae AT wenhuirao completechloroplastgenomeofpholidotaimbricataorchidaceae AT jiehuang completechloroplastgenomeofpholidotaimbricataorchidaceae AT liqiangli completechloroplastgenomeofpholidotaimbricataorchidaceae AT tingzhangli completechloroplastgenomeofpholidotaimbricataorchidaceae AT deminkong completechloroplastgenomeofpholidotaimbricataorchidaceae AT jianbingchen completechloroplastgenomeofpholidotaimbricataorchidaceae |