The complete chloroplast genome of Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950 and its phylogenetic analysis
AbstractZicaitai (Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950) is a vegetable crop that boasts a high nutritional value and unique flavor. It originated from Central China and was formed after long-term cultivation and domestication. In this study, we obtained the complete sequence of the...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2024-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2024.2305403 |
| _version_ | 1797244394206658560 |
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| author | Xianyu Zhou Hailong Ren Jing Zhang Donglin Xu Wanyu Xiao Hongdi Huang Guangguang Li Hua Zhang Yansong Zheng |
| author_facet | Xianyu Zhou Hailong Ren Jing Zhang Donglin Xu Wanyu Xiao Hongdi Huang Guangguang Li Hua Zhang Yansong Zheng |
| author_sort | Xianyu Zhou |
| collection | DOAJ |
| description | AbstractZicaitai (Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950) is a vegetable crop that boasts a high nutritional value and unique flavor. It originated from Central China and was formed after long-term cultivation and domestication. In this study, we obtained the complete sequence of the chloroplast genome of zicaitai, a circular molecule of 153,483 bp in length. This chloroplast genome consists of a large single-copy (LSC) region (83,282 bp), a small single-copy (SSC) region (17,775 bp), and a pair of inverted repeats (IRs) (26,213 bp). By sequence annotation, 132 genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes were identified in the zicaitai chloroplast. A total of 315 simple sequence repeats (SSRs) were found located in LSC (197), SSC (72), and IR (46), respectively. Phylogenetic analysis based on chloroplast genomes indicated the relationship of zicaitai and the Brassicaceae family, which supports zicaitai as a variety of B. rapa in taxonomy. The results obtained in this study provide insight into further research on Brassica chloroplasts and their phylogeny. |
| first_indexed | 2024-03-08T09:05:11Z |
| format | Article |
| id | doaj.art-1a42bf0f83964d5ea12e8a33a4c4da8c |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-04-24T19:10:19Z |
| publishDate | 2024-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-1a42bf0f83964d5ea12e8a33a4c4da8c2024-03-26T11:18:59ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592024-01-019114314710.1080/23802359.2024.2305403The complete chloroplast genome of Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950 and its phylogenetic analysisXianyu Zhou0Hailong Ren1Jing Zhang2Donglin Xu3Wanyu Xiao4Hongdi Huang5Guangguang Li6Hua Zhang7Yansong Zheng8Guangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaGuangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaGuangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaGuangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaGuangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaGuangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaGuangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaGuangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaGuangzhou Academy of Agricultural Sciences, Guangzhou, PR ChinaAbstractZicaitai (Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950) is a vegetable crop that boasts a high nutritional value and unique flavor. It originated from Central China and was formed after long-term cultivation and domestication. In this study, we obtained the complete sequence of the chloroplast genome of zicaitai, a circular molecule of 153,483 bp in length. This chloroplast genome consists of a large single-copy (LSC) region (83,282 bp), a small single-copy (SSC) region (17,775 bp), and a pair of inverted repeats (IRs) (26,213 bp). By sequence annotation, 132 genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes were identified in the zicaitai chloroplast. A total of 315 simple sequence repeats (SSRs) were found located in LSC (197), SSC (72), and IR (46), respectively. Phylogenetic analysis based on chloroplast genomes indicated the relationship of zicaitai and the Brassicaceae family, which supports zicaitai as a variety of B. rapa in taxonomy. The results obtained in this study provide insight into further research on Brassica chloroplasts and their phylogeny.https://www.tandfonline.com/doi/10.1080/23802359.2024.2305403Brassica rapa var. purpurariachloroplast genomephylogenetic analysisSSR |
| spellingShingle | Xianyu Zhou Hailong Ren Jing Zhang Donglin Xu Wanyu Xiao Hongdi Huang Guangguang Li Hua Zhang Yansong Zheng The complete chloroplast genome of Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950 and its phylogenetic analysis Mitochondrial DNA. Part B. Resources Brassica rapa var. purpuraria chloroplast genome phylogenetic analysis SSR |
| title | The complete chloroplast genome of Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950 and its phylogenetic analysis |
| title_full | The complete chloroplast genome of Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950 and its phylogenetic analysis |
| title_fullStr | The complete chloroplast genome of Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950 and its phylogenetic analysis |
| title_full_unstemmed | The complete chloroplast genome of Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950 and its phylogenetic analysis |
| title_short | The complete chloroplast genome of Brassica rapa var. purpuraria (L.H.Bailey) Kitam 1950 and its phylogenetic analysis |
| title_sort | complete chloroplast genome of brassica rapa var purpuraria l h bailey kitam 1950 and its phylogenetic analysis |
| topic | Brassica rapa var. purpuraria chloroplast genome phylogenetic analysis SSR |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2024.2305403 |
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