Estimating probabilistic context-free grammars for proteins using contact map constraints

Interactions between amino acids that are close in the spatial structure, but not necessarily in the sequence, play important structural and functional roles in proteins. These non-local interactions ought to be taken into account when modeling collections of proteins. Yet the most popular represent...

Full description

Bibliographic Details
Main Authors: Witold Dyrka, Mateusz Pyzik, François Coste, Hugo Talibart
Format: Article
Language:English
Published: PeerJ Inc. 2019-03-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/6559.pdf