Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean development
Abstract Transporter proteins play an essential role in the uptake, trafficking and storage of metals in plant tissues. The Natural Resistance-Associated Macrophage Protein (NRAMP) family plays an essential role in divalent metal transport. We conducted bioinformatics approaches to identify seven NR...
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| Format: | Article |
| Language: | English |
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Sociedade Brasileira de Genética
2018-10-01
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| Series: | Genetics and Molecular Biology |
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| Online Access: | http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572018000500820&lng=en&tlng=en |
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| author | Juliane Karine Ishida Danielle G.G. Caldas Lucas Roberto Oliveira Gabriela Campos Frederici Lucas Margato Pereira Leite Tsai Siu Mui |
| author_facet | Juliane Karine Ishida Danielle G.G. Caldas Lucas Roberto Oliveira Gabriela Campos Frederici Lucas Margato Pereira Leite Tsai Siu Mui |
| author_sort | Juliane Karine Ishida |
| collection | DOAJ |
| description | Abstract Transporter proteins play an essential role in the uptake, trafficking and storage of metals in plant tissues. The Natural Resistance-Associated Macrophage Protein (NRAMP) family plays an essential role in divalent metal transport. We conducted bioinformatics approaches to identify seven NRAMP genes in the Phaseolus vulgaris genome, investigated their phylogenetic relation, and performed transmembrane domain and gene/protein structure analyses. We found that the NRAMP gene family forms two distinct groups. One group included the PvNRAMP1, -6, and -7 genes that share a fragmented structure with a numerous exon/intron organization and encode proteins with mitochondrial or plastidial localization. The other group is characterized by few exons that encode cytoplasmic proteins. In addition, our data indicated that PvNRAMP6 and -7 may be involved in mineral uptake and mobilization in nodule tissues, while the genes PvNRAMP1, -2, -3, -4 and -5 are potentially recruited during plant development. This data provided a more comprehensive understanding of the role of NRAMP transporters in metal homeostasis in P. vulgaris. |
| first_indexed | 2024-12-23T11:21:20Z |
| format | Article |
| id | doaj.art-1b1ec812f2f840adb170dc528977bab0 |
| institution | Directory Open Access Journal |
| issn | 1678-4685 |
| language | English |
| last_indexed | 2024-12-23T11:21:20Z |
| publishDate | 2018-10-01 |
| publisher | Sociedade Brasileira de Genética |
| record_format | Article |
| series | Genetics and Molecular Biology |
| spelling | doaj.art-1b1ec812f2f840adb170dc528977bab02022-12-21T17:49:04ZengSociedade Brasileira de GenéticaGenetics and Molecular Biology1678-46852018-10-0141482083310.1590/1678-4685-gmb-2017-0272S1415-47572018000500820Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean developmentJuliane Karine IshidaDanielle G.G. CaldasLucas Roberto OliveiraGabriela Campos FredericiLucas Margato Pereira LeiteTsai Siu MuiAbstract Transporter proteins play an essential role in the uptake, trafficking and storage of metals in plant tissues. The Natural Resistance-Associated Macrophage Protein (NRAMP) family plays an essential role in divalent metal transport. We conducted bioinformatics approaches to identify seven NRAMP genes in the Phaseolus vulgaris genome, investigated their phylogenetic relation, and performed transmembrane domain and gene/protein structure analyses. We found that the NRAMP gene family forms two distinct groups. One group included the PvNRAMP1, -6, and -7 genes that share a fragmented structure with a numerous exon/intron organization and encode proteins with mitochondrial or plastidial localization. The other group is characterized by few exons that encode cytoplasmic proteins. In addition, our data indicated that PvNRAMP6 and -7 may be involved in mineral uptake and mobilization in nodule tissues, while the genes PvNRAMP1, -2, -3, -4 and -5 are potentially recruited during plant development. This data provided a more comprehensive understanding of the role of NRAMP transporters in metal homeostasis in P. vulgaris.http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572018000500820&lng=en&tlng=enPhaseolus vulgaristransporterNRAMPgene familyphylogenetic analysis |
| spellingShingle | Juliane Karine Ishida Danielle G.G. Caldas Lucas Roberto Oliveira Gabriela Campos Frederici Lucas Margato Pereira Leite Tsai Siu Mui Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean development Genetics and Molecular Biology Phaseolus vulgaris transporter NRAMP gene family phylogenetic analysis |
| title | Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean development |
| title_full | Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean development |
| title_fullStr | Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean development |
| title_full_unstemmed | Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean development |
| title_short | Genome-wide characterization of the NRAMP gene family in Phaseolus vulgaris provides insights into functional implications during common bean development |
| title_sort | genome wide characterization of the nramp gene family in phaseolus vulgaris provides insights into functional implications during common bean development |
| topic | Phaseolus vulgaris transporter NRAMP gene family phylogenetic analysis |
| url | http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572018000500820&lng=en&tlng=en |
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