The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae)
Quercus sessilifolia Blume is one of the dominant tree species in East Asian evergreen broadleaved forests. In this study, we assembled and characterized the plastome of Q. sessilifolia using Illumina paired-end data. The circular genome is 160,813 bp in size, consisting of two copies of inverted re...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.2017366 |
| _version_ | 1827772215671652352 |
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| author | Shuifei Chen Wenwen Zhang Yao Li Xiaomin Ge Xu Zhou Yaping Hu Hui Ding |
| author_facet | Shuifei Chen Wenwen Zhang Yao Li Xiaomin Ge Xu Zhou Yaping Hu Hui Ding |
| author_sort | Shuifei Chen |
| collection | DOAJ |
| description | Quercus sessilifolia Blume is one of the dominant tree species in East Asian evergreen broadleaved forests. In this study, we assembled and characterized the plastome of Q. sessilifolia using Illumina paired-end data. The circular genome is 160,813 bp in size, consisting of two copies of inverted repeat (IR) regions of 25,862 bp, one large single-copy (LSC) region of 90,218 bp, and one small single-copy (SSC) region of 18,871 bp. It encodes a total of 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 28 chloroplast genome sequences indicated that Q. sessilifolia was most closely related to Q. myrsinifolia with 90% bootstrap support. |
| first_indexed | 2024-03-11T13:06:13Z |
| format | Article |
| id | doaj.art-1b5c7f440d934179be563608d7b65fd1 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:13Z |
| publishDate | 2022-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-1b5c7f440d934179be563608d7b65fd12023-11-03T14:36:01ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-01-017118218410.1080/23802359.2021.20173662017366The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae)Shuifei Chen0Wenwen Zhang1Yao Li2Xiaomin Ge3Xu Zhou4Yaping Hu5Hui Ding6Research Center for Biodiversity Conservation and Biosafety/State Environmental Protection Scientific Observation and Research Station for Ecological Environment of Wuyi Mountains/Biodiversity Comprehensive Observation Station for Wuyi Mountains/State Environmental Protection Key Laboratory on Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment of ChinaResearch Center for Biodiversity Conservation and Biosafety/State Environmental Protection Scientific Observation and Research Station for Ecological Environment of Wuyi Mountains/Biodiversity Comprehensive Observation Station for Wuyi Mountains/State Environmental Protection Key Laboratory on Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment of ChinaCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, Nanjing Forestry UniversityResearch Center for Biodiversity Conservation and Biosafety/State Environmental Protection Scientific Observation and Research Station for Ecological Environment of Wuyi Mountains/Biodiversity Comprehensive Observation Station for Wuyi Mountains/State Environmental Protection Key Laboratory on Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment of ChinaResearch Center for Biodiversity Conservation and Biosafety/State Environmental Protection Scientific Observation and Research Station for Ecological Environment of Wuyi Mountains/Biodiversity Comprehensive Observation Station for Wuyi Mountains/State Environmental Protection Key Laboratory on Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment of ChinaResearch Center for Biodiversity Conservation and Biosafety/State Environmental Protection Scientific Observation and Research Station for Ecological Environment of Wuyi Mountains/Biodiversity Comprehensive Observation Station for Wuyi Mountains/State Environmental Protection Key Laboratory on Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment of ChinaResearch Center for Biodiversity Conservation and Biosafety/State Environmental Protection Scientific Observation and Research Station for Ecological Environment of Wuyi Mountains/Biodiversity Comprehensive Observation Station for Wuyi Mountains/State Environmental Protection Key Laboratory on Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment of ChinaQuercus sessilifolia Blume is one of the dominant tree species in East Asian evergreen broadleaved forests. In this study, we assembled and characterized the plastome of Q. sessilifolia using Illumina paired-end data. The circular genome is 160,813 bp in size, consisting of two copies of inverted repeat (IR) regions of 25,862 bp, one large single-copy (LSC) region of 90,218 bp, and one small single-copy (SSC) region of 18,871 bp. It encodes a total of 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 28 chloroplast genome sequences indicated that Q. sessilifolia was most closely related to Q. myrsinifolia with 90% bootstrap support.http://dx.doi.org/10.1080/23802359.2021.2017366chloroplast genomefagaceaephylogeny; quercus sessilifolia |
| spellingShingle | Shuifei Chen Wenwen Zhang Yao Li Xiaomin Ge Xu Zhou Yaping Hu Hui Ding The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae) Mitochondrial DNA. Part B. Resources chloroplast genome fagaceae phylogeny; quercus sessilifolia |
| title | The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae) |
| title_full | The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae) |
| title_fullStr | The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae) |
| title_short | The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae) |
| title_sort | complete chloroplast genome sequence of quercus sessilifolia blume fagaceae |
| topic | chloroplast genome fagaceae phylogeny; quercus sessilifolia |
| url | http://dx.doi.org/10.1080/23802359.2021.2017366 |
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