Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides

Antisense oligonucleotides (ASOs) have the ability of binding to endogenous nucleic acid targets, thereby inhibiting the gene expression. Although ASOs have great potential in the treatment of many diseases, the search for favorable toxicity profiles and distribution has been challenging and consequ...

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Main Authors: Mathias B. Danielsen, Jesper Wengel
Format: Article
Language:English
Published: Beilstein-Institut 2021-07-01
Series:Beilstein Journal of Organic Chemistry
Subjects:
Online Access:https://doi.org/10.3762/bjoc.17.125
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author Mathias B. Danielsen
Jesper Wengel
author_facet Mathias B. Danielsen
Jesper Wengel
author_sort Mathias B. Danielsen
collection DOAJ
description Antisense oligonucleotides (ASOs) have the ability of binding to endogenous nucleic acid targets, thereby inhibiting the gene expression. Although ASOs have great potential in the treatment of many diseases, the search for favorable toxicity profiles and distribution has been challenging and consequently impeded the widespread use of ASOs as conventional medicine. One strategy that has been employed to optimize the delivery profile of ASOs, is the functionalization of ASOs with cationic amine groups, either by direct conjugation onto the sugar, nucleobase or internucleotide linkage. The introduction of these positively charged groups has improved properties like nuclease resistance, increased binding to the nucleic acid target and improved cell uptake for oligonucleotides (ONs) and ASOs. The modifications highlighted in this review are some of the most prevalent cationic amine groups which have been attached as single modifications onto ONs/ASOs. The review has been separated into three sections, nucleobase, sugar and backbone modifications, highlighting what impact the cationic amine groups have on the ONs/ASOs physiochemical and biological properties. Finally, a concluding section has been added, summarizing the important knowledge from the three chapters, and examining the future design for ASOs.
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spelling doaj.art-1b7504243dad401e8ba68390a09d57d82022-12-21T20:02:07ZengBeilstein-InstitutBeilstein Journal of Organic Chemistry1860-53972021-07-011711828184810.3762/bjoc.17.1251860-5397-17-125Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotidesMathias B. Danielsen0Jesper Wengel1Biomolecular Nanoscale Engineering Center, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, DenmarkBiomolecular Nanoscale Engineering Center, Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense M, DenmarkAntisense oligonucleotides (ASOs) have the ability of binding to endogenous nucleic acid targets, thereby inhibiting the gene expression. Although ASOs have great potential in the treatment of many diseases, the search for favorable toxicity profiles and distribution has been challenging and consequently impeded the widespread use of ASOs as conventional medicine. One strategy that has been employed to optimize the delivery profile of ASOs, is the functionalization of ASOs with cationic amine groups, either by direct conjugation onto the sugar, nucleobase or internucleotide linkage. The introduction of these positively charged groups has improved properties like nuclease resistance, increased binding to the nucleic acid target and improved cell uptake for oligonucleotides (ONs) and ASOs. The modifications highlighted in this review are some of the most prevalent cationic amine groups which have been attached as single modifications onto ONs/ASOs. The review has been separated into three sections, nucleobase, sugar and backbone modifications, highlighting what impact the cationic amine groups have on the ONs/ASOs physiochemical and biological properties. Finally, a concluding section has been added, summarizing the important knowledge from the three chapters, and examining the future design for ASOs.https://doi.org/10.3762/bjoc.17.125antisense oligonucleotidesbackbone modificationscationsnucleobase modificationssugar modifications
spellingShingle Mathias B. Danielsen
Jesper Wengel
Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides
Beilstein Journal of Organic Chemistry
antisense oligonucleotides
backbone modifications
cations
nucleobase modifications
sugar modifications
title Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides
title_full Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides
title_fullStr Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides
title_full_unstemmed Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides
title_short Cationic oligonucleotide derivatives and conjugates: A favorable approach for enhanced DNA and RNA targeting oligonucleotides
title_sort cationic oligonucleotide derivatives and conjugates a favorable approach for enhanced dna and rna targeting oligonucleotides
topic antisense oligonucleotides
backbone modifications
cations
nucleobase modifications
sugar modifications
url https://doi.org/10.3762/bjoc.17.125
work_keys_str_mv AT mathiasbdanielsen cationicoligonucleotidederivativesandconjugatesafavorableapproachforenhanceddnaandrnatargetingoligonucleotides
AT jesperwengel cationicoligonucleotidederivativesandconjugatesafavorableapproachforenhanceddnaandrnatargetingoligonucleotides