The complete chloroplast genome sequence of Trikeraia hookeri
Trikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large...
| Main Authors: | , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-09-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1961621 |
| _version_ | 1797638766206124032 |
|---|---|
| author | Demei Liu Liu Ruijuan Shihai Yang Xiang Li Yemeng Zhang Lili Zhu Yushou Ma |
| author_facet | Demei Liu Liu Ruijuan Shihai Yang Xiang Li Yemeng Zhang Lili Zhu Yushou Ma |
| author_sort | Demei Liu |
| collection | DOAJ |
| description | Trikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large single-copy region (LSC 81,613 bp), and a small single-copy region (SSC 28,568 bp). The T. hookeri chloroplast genome encodes 119 genes: 81 mRNA genes, 34 tRNA genes and 4 rRNA genes. The GC content of T. hookeri chloroplast genome was 38.8% and those in LSC, SSC, and IR regions were 36.9, 40.8, and 42.3%, respectively. The maximum-likelihood phylogenetic analysis demonstrated that T. hookeri was most closely related to Stipa lipskyi (NC028444) and Stipa purpurrea (NC029390). Our findings provide fundamental information for further evolutionary and phylogenetic researches of T. hookeri. |
| first_indexed | 2024-03-11T13:08:12Z |
| format | Article |
| id | doaj.art-1f09be30f1bd4f418ebacd5566ed6c5e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:12Z |
| publishDate | 2021-09-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-1f09be30f1bd4f418ebacd5566ed6c5e2023-11-03T14:28:29ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-09-01692712271310.1080/23802359.2021.19616211961621The complete chloroplast genome sequence of Trikeraia hookeriDemei Liu0Liu Ruijuan1Shihai Yang2Xiang Li3Yemeng Zhang4Lili Zhu5Yushou Ma6China and Qinghai Provincial Key Laboratory of Crop Molecular Breeding Northwest Institute of Plateau Biology, Chinese Academy of SciencesChina and Qinghai Provincial Key Laboratory of Crop Molecular Breeding Northwest Institute of Plateau Biology, Chinese Academy of SciencesTibet Yunwang Industrial Co., LtdChina and Qinghai Provincial Key Laboratory of Crop Molecular Breeding Northwest Institute of Plateau Biology, Chinese Academy of SciencesChina and Qinghai Provincial Key Laboratory of Crop Molecular Breeding Northwest Institute of Plateau Biology, Chinese Academy of SciencesChina and Qinghai Provincial Key Laboratory of Crop Molecular Breeding Northwest Institute of Plateau Biology, Chinese Academy of SciencesQinghai Academy of Animal and Veterinary Science/State Key Laboratory of Plateau Ecology and Agriculture, Qinghai UniversityTrikeraia hookeri is an alpine grass with significant ecological value. Here, the complete chloroplast genome sequence of T. hookeri using Illumina sequencing data was reported. The size of the whole cp genome was 137,696 bp in length, consisting of a pair of inverted repeats (IR 13,755 bp), a large single-copy region (LSC 81,613 bp), and a small single-copy region (SSC 28,568 bp). The T. hookeri chloroplast genome encodes 119 genes: 81 mRNA genes, 34 tRNA genes and 4 rRNA genes. The GC content of T. hookeri chloroplast genome was 38.8% and those in LSC, SSC, and IR regions were 36.9, 40.8, and 42.3%, respectively. The maximum-likelihood phylogenetic analysis demonstrated that T. hookeri was most closely related to Stipa lipskyi (NC028444) and Stipa purpurrea (NC029390). Our findings provide fundamental information for further evolutionary and phylogenetic researches of T. hookeri.http://dx.doi.org/10.1080/23802359.2021.1961621trikeraia hookerichloroplast genomepoaceaephylogenetic analysis |
| spellingShingle | Demei Liu Liu Ruijuan Shihai Yang Xiang Li Yemeng Zhang Lili Zhu Yushou Ma The complete chloroplast genome sequence of Trikeraia hookeri Mitochondrial DNA. Part B. Resources trikeraia hookeri chloroplast genome poaceae phylogenetic analysis |
| title | The complete chloroplast genome sequence of Trikeraia hookeri |
| title_full | The complete chloroplast genome sequence of Trikeraia hookeri |
| title_fullStr | The complete chloroplast genome sequence of Trikeraia hookeri |
| title_full_unstemmed | The complete chloroplast genome sequence of Trikeraia hookeri |
| title_short | The complete chloroplast genome sequence of Trikeraia hookeri |
| title_sort | complete chloroplast genome sequence of trikeraia hookeri |
| topic | trikeraia hookeri chloroplast genome poaceae phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1961621 |
| work_keys_str_mv | AT demeiliu thecompletechloroplastgenomesequenceoftrikeraiahookeri AT liuruijuan thecompletechloroplastgenomesequenceoftrikeraiahookeri AT shihaiyang thecompletechloroplastgenomesequenceoftrikeraiahookeri AT xiangli thecompletechloroplastgenomesequenceoftrikeraiahookeri AT yemengzhang thecompletechloroplastgenomesequenceoftrikeraiahookeri AT lilizhu thecompletechloroplastgenomesequenceoftrikeraiahookeri AT yushouma thecompletechloroplastgenomesequenceoftrikeraiahookeri AT demeiliu completechloroplastgenomesequenceoftrikeraiahookeri AT liuruijuan completechloroplastgenomesequenceoftrikeraiahookeri AT shihaiyang completechloroplastgenomesequenceoftrikeraiahookeri AT xiangli completechloroplastgenomesequenceoftrikeraiahookeri AT yemengzhang completechloroplastgenomesequenceoftrikeraiahookeri AT lilizhu completechloroplastgenomesequenceoftrikeraiahookeri AT yushouma completechloroplastgenomesequenceoftrikeraiahookeri |