TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

Abstract Chromosome-scale genome sequence assemblies underpin pan-genomic studies. Recent genome assembly efforts in the large-genome Triticeae crops wheat and barley have relied on the commercial closed-source assembly algorithm DeNovoMagic. We present TRITEX, an open-source computational workflow...

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Bibliographic Details
Main Authors: Cécile Monat, Sudharsan Padmarasu, Thomas Lux, Thomas Wicker, Heidrun Gundlach, Axel Himmelbach, Jennifer Ens, Chengdao Li, Gary J. Muehlbauer, Alan H. Schulman, Robbie Waugh, Ilka Braumann, Curtis Pozniak, Uwe Scholz, Klaus F. X. Mayer, Manuel Spannagl, Nils Stein, Martin Mascher
Format: Article
Language:English
Published: BMC 2019-12-01
Series:Genome Biology
Online Access:https://doi.org/10.1186/s13059-019-1899-5

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