On the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program
The study is concerned with the feasibility of applying machine-learning methods to determine the sex from craniometric features when working with materials from archaeological excavations. A specific feature of such materials is subjectively estimated sex and age characteristics of individuals. The...
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| Format: | Article |
| Language: | Russian |
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Tyumen Scientific Centre SB RA
2023-09-01
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| Series: | Вестник археологии, антропологии и этнографии |
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| Online Access: | http://ipdn.ru/_private/a62/129-138.pdf |
| _version_ | 1797688212988100608 |
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| author | Shirobokov I.G. |
| author_facet | Shirobokov I.G. |
| author_sort | Shirobokov I.G. |
| collection | DOAJ |
| description | The study is concerned with the feasibility of applying machine-learning methods to determine the sex from craniometric features when working with materials from archaeological excavations. A specific feature of such materials is subjectively estimated sex and age characteristics of individuals. The main object of the analysis was a sample measured by V.P. Alekseev and comprised of 258 crania (137 male and 121 female) characterising Russian population of the European part of Russia in the 17th–18th cc. As a test sample, a group of crania of the Russians with documented sex and age, registered within several collections of the Kunstkamera’s repository, also measured by V.P. Alekseev, was used. The series includes 89 male and 10 female skulls, which came to the museum from the Military Medical Academy in 1911–1914 by the effort of the Russian anatomist K.Z. Yatsuta. The models were trained, validated, and tested using four different methods, including discriminant analysis, logistic regression, random forest, and support vector machine. Thirty-three craniometric traits were included in the analysis, from which a group of five features with the highest differentiating ability (Nos. by Martin) — 1, 40, 43, 45, 75(1) — was chosen. When both sets of traits were used for the models commensurable performance indicators were obtained. According to the results of the cross-validation, in 85–88 % of cases, on average, all four models accurately predicted the sex estimates given by V.P. Alekseev. When the models were applied to the test sample, the proportion of accurate classifications did not change and stood at 87–88 %. At the same time, the machine-learning methods did not reveal any noticeable advantages in the level of the classification accuracy over the linear discriminant analysis. In general, the efficiency of the obtained models corresponds to the average value of the indicators calculated from the materials of 80 publications (86 %). It is likely that the crania, whose sex cannot be correctly classified neither by the models nor by visual assessment, constitute overlapping sets, which have some common morphological features assimilating them to individuals of the opposite sex. Application of the models to the skulls of the test sample, re-measured by the author, revealed some deterioration of the model performance indicators in all four cases. The decrease in the proportion of accurate classifications is caused mainly by discrepancies in the estimation of the nasal protrusion angle, as well as subjective errors in the size estimation under insufficient preservation of the crania and partial atrophy of the alveolar process. |
| first_indexed | 2024-03-12T01:28:03Z |
| format | Article |
| id | doaj.art-1f308c922472409892067415e1ba9b88 |
| institution | Directory Open Access Journal |
| issn | 1811-7465 2071-0437 |
| language | Russian |
| last_indexed | 2024-03-12T01:28:03Z |
| publishDate | 2023-09-01 |
| publisher | Tyumen Scientific Centre SB RA |
| record_format | Article |
| series | Вестник археологии, антропологии и этнографии |
| spelling | doaj.art-1f308c922472409892067415e1ba9b882023-09-12T10:43:43ZrusTyumen Scientific Centre SB RAВестник археологии, антропологии и этнографии1811-74652071-04372023-09-013(62)12913810.20874/2071-0437-2023-62-3-11On the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program Shirobokov I.G.0https://orcid.org/0000-0002-3555-7509Peter the Great Museum of Anthropology and EthnographyThe study is concerned with the feasibility of applying machine-learning methods to determine the sex from craniometric features when working with materials from archaeological excavations. A specific feature of such materials is subjectively estimated sex and age characteristics of individuals. The main object of the analysis was a sample measured by V.P. Alekseev and comprised of 258 crania (137 male and 121 female) characterising Russian population of the European part of Russia in the 17th–18th cc. As a test sample, a group of crania of the Russians with documented sex and age, registered within several collections of the Kunstkamera’s repository, also measured by V.P. Alekseev, was used. The series includes 89 male and 10 female skulls, which came to the museum from the Military Medical Academy in 1911–1914 by the effort of the Russian anatomist K.Z. Yatsuta. The models were trained, validated, and tested using four different methods, including discriminant analysis, logistic regression, random forest, and support vector machine. Thirty-three craniometric traits were included in the analysis, from which a group of five features with the highest differentiating ability (Nos. by Martin) — 1, 40, 43, 45, 75(1) — was chosen. When both sets of traits were used for the models commensurable performance indicators were obtained. According to the results of the cross-validation, in 85–88 % of cases, on average, all four models accurately predicted the sex estimates given by V.P. Alekseev. When the models were applied to the test sample, the proportion of accurate classifications did not change and stood at 87–88 %. At the same time, the machine-learning methods did not reveal any noticeable advantages in the level of the classification accuracy over the linear discriminant analysis. In general, the efficiency of the obtained models corresponds to the average value of the indicators calculated from the materials of 80 publications (86 %). It is likely that the crania, whose sex cannot be correctly classified neither by the models nor by visual assessment, constitute overlapping sets, which have some common morphological features assimilating them to individuals of the opposite sex. Application of the models to the skulls of the test sample, re-measured by the author, revealed some deterioration of the model performance indicators in all four cases. The decrease in the proportion of accurate classifications is caused mainly by discrepancies in the estimation of the nasal protrusion angle, as well as subjective errors in the size estimation under insufficient preservation of the crania and partial atrophy of the alveolar process.http://ipdn.ru/_private/a62/129-138.pdfsex estimationcraniometrics traitsdiscriminant analysissupport vector machinelogistic regressionrandom forestmachine learning methods |
| spellingShingle | Shirobokov I.G. On the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program Вестник археологии, антропологии и этнографии sex estimation craniometrics traits discriminant analysis support vector machine logistic regression random forest machine learning methods |
| title | On the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program |
| title_full | On the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program |
| title_fullStr | On the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program |
| title_full_unstemmed | On the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program |
| title_short | On the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program |
| title_sort | on the use of collections with unreliably determined sex and age characteristics in model training for sex determination by traits of the standard craniometric program |
| topic | sex estimation craniometrics traits discriminant analysis support vector machine logistic regression random forest machine learning methods |
| url | http://ipdn.ru/_private/a62/129-138.pdf |
| work_keys_str_mv | AT shirobokovig ontheuseofcollectionswithunreliablydeterminedsexandagecharacteristicsinmodeltrainingforsexdeterminationbytraitsofthestandardcraniometricprogram |