The complete chloroplast genome sequence of Santalum album
The first complete chloroplast genome (cpDNA) sequence of Santalum album was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1704199 |
| _version_ | 1827773104222371840 |
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| author | Dejun Yang Qiong Qiu Linhong Xu Yumei Xu Yi Wang |
| author_facet | Dejun Yang Qiong Qiu Linhong Xu Yumei Xu Yi Wang |
| author_sort | Dejun Yang |
| collection | DOAJ |
| description | The first complete chloroplast genome (cpDNA) sequence of Santalum album was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were separated by a pair of inverted repeats (IR) regions of 24,514 bp. The genome contains 123 genes, including 80 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 35.9%, 31.4%, and 43.1%, respectively. Further phylogenomic analysis showed that S. album and Osyris alba clustered in a clade in Santalales order. |
| first_indexed | 2024-03-11T13:18:16Z |
| format | Article |
| id | doaj.art-1f371758199c4b859b28f46672f995cc |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:16Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-1f371758199c4b859b28f46672f995cc2023-11-03T11:00:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015140640710.1080/23802359.2019.17041991704199The complete chloroplast genome sequence of Santalum albumDejun Yang0Qiong Qiu1Linhong Xu2Yumei Xu3Yi Wang4Institute of Tropical Forestry, Yunnan Academy of ForestryInstitute of Tropical Forestry, Yunnan Academy of ForestryInstitute of Tropical Forestry, Yunnan Academy of ForestryInstitute of Tropical Forestry, Yunnan Academy of ForestryInstitute of Tropical Forestry, Yunnan Academy of ForestryThe first complete chloroplast genome (cpDNA) sequence of Santalum album was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were separated by a pair of inverted repeats (IR) regions of 24,514 bp. The genome contains 123 genes, including 80 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 35.9%, 31.4%, and 43.1%, respectively. Further phylogenomic analysis showed that S. album and Osyris alba clustered in a clade in Santalales order.http://dx.doi.org/10.1080/23802359.2019.1704199santalum albumchloroplastillumina sequencingphylogenetic analysis |
| spellingShingle | Dejun Yang Qiong Qiu Linhong Xu Yumei Xu Yi Wang The complete chloroplast genome sequence of Santalum album Mitochondrial DNA. Part B. Resources santalum album chloroplast illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of Santalum album |
| title_full | The complete chloroplast genome sequence of Santalum album |
| title_fullStr | The complete chloroplast genome sequence of Santalum album |
| title_full_unstemmed | The complete chloroplast genome sequence of Santalum album |
| title_short | The complete chloroplast genome sequence of Santalum album |
| title_sort | complete chloroplast genome sequence of santalum album |
| topic | santalum album chloroplast illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1704199 |
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