The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis
Cumin (Cuminum cyminum L). belongs to the family Apiaceae and the order Apiales, which is a widely grown spice and medicinal plant in Xinjiang province, China. In the current study, whole genome sequencing of C. cyminum was performed using the Illumina HiSeq 4000 platform, and the complete mitogenom...
| Main Authors: | , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2023-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2023.2238357 |
| _version_ | 1797638481838604288 |
|---|---|
| author | Ge Chen Ruiping Kang Zihao Wang Yu Jiang Huiying Zhou Aifeire Abuduaini Feiya Suo Luodong Huang |
| author_facet | Ge Chen Ruiping Kang Zihao Wang Yu Jiang Huiying Zhou Aifeire Abuduaini Feiya Suo Luodong Huang |
| author_sort | Ge Chen |
| collection | DOAJ |
| description | Cumin (Cuminum cyminum L). belongs to the family Apiaceae and the order Apiales, which is a widely grown spice and medicinal plant in Xinjiang province, China. In the current study, whole genome sequencing of C. cyminum was performed using the Illumina HiSeq 4000 platform, and the complete mitogenome sequence was assembled and annotated. We found that the single circular mitogenome of C. cyminum was 246,721 bp in length, and has about 45.5% GC content. It comprised 73 genes in the coding region (35 protein-coding genes, 18 tRNA genes, 3 rRNA genes, and 15 open-reading frames) and a non-coding region. Phylogenetic analysis indicated that C. cyminum is closely related to Daucus carota and the subtribes Daucinae. The mitogenome of C. cyminum revealed its phylogenetic relationships with other species in the Apiaceae family, which would further help in understanding its evolution. |
| first_indexed | 2024-03-11T13:03:59Z |
| format | Article |
| id | doaj.art-200fc17ad72142f38c56a2451f06a8b8 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:03:59Z |
| publishDate | 2023-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-200fc17ad72142f38c56a2451f06a8b82023-11-03T14:44:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-07-018776076510.1080/23802359.2023.22383572238357The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysisGe Chen0Ruiping Kang1Zihao Wang2Yu Jiang3Huiying Zhou4Aifeire Abuduaini5Feiya Suo6Luodong Huang7College of Life Science and Technology, Guangxi UniversityCollege of Life Science and Technology, Xinjiang UniversityCollege of Life Science and Technology, Guangxi UniversityCollege of Life Science and Technology, Guangxi UniversityCollege of Life Science and Technology, Xinjiang UniversityCollege of Life Science and Technology, Xinjiang UniversityCollege of Life Science and Technology, Xinjiang UniversityCollege of Life Science and Technology, Guangxi UniversityCumin (Cuminum cyminum L). belongs to the family Apiaceae and the order Apiales, which is a widely grown spice and medicinal plant in Xinjiang province, China. In the current study, whole genome sequencing of C. cyminum was performed using the Illumina HiSeq 4000 platform, and the complete mitogenome sequence was assembled and annotated. We found that the single circular mitogenome of C. cyminum was 246,721 bp in length, and has about 45.5% GC content. It comprised 73 genes in the coding region (35 protein-coding genes, 18 tRNA genes, 3 rRNA genes, and 15 open-reading frames) and a non-coding region. Phylogenetic analysis indicated that C. cyminum is closely related to Daucus carota and the subtribes Daucinae. The mitogenome of C. cyminum revealed its phylogenetic relationships with other species in the Apiaceae family, which would further help in understanding its evolution.http://dx.doi.org/10.1080/23802359.2023.2238357cuminum cyminummitogenomeapiaceaephylogenetic analysis |
| spellingShingle | Ge Chen Ruiping Kang Zihao Wang Yu Jiang Huiying Zhou Aifeire Abuduaini Feiya Suo Luodong Huang The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis Mitochondrial DNA. Part B. Resources cuminum cyminum mitogenome apiaceae phylogenetic analysis |
| title | The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis |
| title_full | The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis |
| title_fullStr | The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis |
| title_full_unstemmed | The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis |
| title_short | The complete mitochondrial genome of Cuminum cyminum (Apiales: Apiaceae) and phylogenetic analysis |
| title_sort | complete mitochondrial genome of cuminum cyminum apiales apiaceae and phylogenetic analysis |
| topic | cuminum cyminum mitogenome apiaceae phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2023.2238357 |
| work_keys_str_mv | AT gechen thecompletemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT ruipingkang thecompletemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT zihaowang thecompletemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT yujiang thecompletemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT huiyingzhou thecompletemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT aifeireabuduaini thecompletemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT feiyasuo thecompletemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT luodonghuang thecompletemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT gechen completemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT ruipingkang completemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT zihaowang completemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT yujiang completemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT huiyingzhou completemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT aifeireabuduaini completemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT feiyasuo completemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis AT luodonghuang completemitochondrialgenomeofcuminumcyminumapialesapiaceaeandphylogeneticanalysis |