Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysis
AbstractWe assembled the complete mitochondrial genome (mitogenome) of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) by the data generated from the next-generation sequencing platform. The complete mitogenome of M. papua was 16,560 bp in length, containing 14 protein-coding genes, two trans...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2023-11-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2023.2281033 |
| _version_ | 1827308546725773312 |
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| author | Wangxiao Xia Hui Jiang Wenbo Fan Xiaomin Li Yaowen Liu Lixian Xu Xingchun Gou |
| author_facet | Wangxiao Xia Hui Jiang Wenbo Fan Xiaomin Li Yaowen Liu Lixian Xu Xingchun Gou |
| author_sort | Wangxiao Xia |
| collection | DOAJ |
| description | AbstractWe assembled the complete mitochondrial genome (mitogenome) of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) by the data generated from the next-generation sequencing platform. The complete mitogenome of M. papua was 16,560 bp in length, containing 14 protein-coding genes, two transfer RNA genes, and two ribosomal RNA genes. The base compositions were A 30.65%, C 15.16%, G 16.34%, and T 37.86%, with a gene arrangement similar to the mitogenomes derived from other representatives of Scyphozoa. Based on the 13 common protein-coding genes of 16 species within Scyphozoa, we constructed the phylogenetic tree and found that M. papua has a close relationship with Cassiopea andromeda and Cassiopea xamachana. All these species belong to an order of jellyfish Rhizostomeae, which have similar morphological characteristics. This is agreement with the conclusion we got by the phylogenetic relationship analysis using molecular data. This research has practical implications for advancing understanding of the phylogenetic relationships, taxonomic classifications, and phylogeography within Scyphozoa. |
| first_indexed | 2024-03-08T15:56:16Z |
| format | Article |
| id | doaj.art-20576915cc1b4c6e9d338dd05416046a |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-04-24T19:10:22Z |
| publishDate | 2023-11-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-20576915cc1b4c6e9d338dd05416046a2024-03-26T11:04:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-11-018111294129710.1080/23802359.2023.2281033Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysisWangxiao Xia0Hui Jiang1Wenbo Fan2Xiaomin Li3Yaowen Liu4Lixian Xu5Xingchun Gou6Institute of Basic Translational Medicine, Shaanxi Key Laboratory of Brain Disorders, Xi’an Medical University, Xi’an, ChinaNational Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, ChinaDepartment of Anesthesiology, School of Stomatology, State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Engineering Research Center for Dental Materials and Advanced Manufacture, Air Force Military Medical University, Xi’an, ChinaDepartment of Anesthesiology, School of Stomatology, State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Engineering Research Center for Dental Materials and Advanced Manufacture, Air Force Military Medical University, Xi’an, ChinaCollege of Veterinary Medicine, Yunnan Agricultural University, Kunming, ChinaDepartment of Anesthesiology, School of Stomatology, State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Engineering Research Center for Dental Materials and Advanced Manufacture, Air Force Military Medical University, Xi’an, ChinaInstitute of Basic Translational Medicine, Shaanxi Key Laboratory of Brain Disorders, Xi’an Medical University, Xi’an, ChinaAbstractWe assembled the complete mitochondrial genome (mitogenome) of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) by the data generated from the next-generation sequencing platform. The complete mitogenome of M. papua was 16,560 bp in length, containing 14 protein-coding genes, two transfer RNA genes, and two ribosomal RNA genes. The base compositions were A 30.65%, C 15.16%, G 16.34%, and T 37.86%, with a gene arrangement similar to the mitogenomes derived from other representatives of Scyphozoa. Based on the 13 common protein-coding genes of 16 species within Scyphozoa, we constructed the phylogenetic tree and found that M. papua has a close relationship with Cassiopea andromeda and Cassiopea xamachana. All these species belong to an order of jellyfish Rhizostomeae, which have similar morphological characteristics. This is agreement with the conclusion we got by the phylogenetic relationship analysis using molecular data. This research has practical implications for advancing understanding of the phylogenetic relationships, taxonomic classifications, and phylogeography within Scyphozoa.https://www.tandfonline.com/doi/10.1080/23802359.2023.2281033Mastigias papuamitochondrial genomenext-generation sequencingphylogenetic analysis |
| spellingShingle | Wangxiao Xia Hui Jiang Wenbo Fan Xiaomin Li Yaowen Liu Lixian Xu Xingchun Gou Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysis Mitochondrial DNA. Part B. Resources Mastigias papua mitochondrial genome next-generation sequencing phylogenetic analysis |
| title | Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysis |
| title_full | Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysis |
| title_fullStr | Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysis |
| title_full_unstemmed | Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysis |
| title_short | Complete mitochondrial genome of Mastigias papua (Scyphozoa: Rhizostomeae: Mastigiidae) based on next-generation sequencing and phylogenetic analysis |
| title_sort | complete mitochondrial genome of mastigias papua scyphozoa rhizostomeae mastigiidae based on next generation sequencing and phylogenetic analysis |
| topic | Mastigias papua mitochondrial genome next-generation sequencing phylogenetic analysis |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2023.2281033 |
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