Complete mitochondrial genome of natural diploid loaches Misgurnus anguillicaudatus from the Taihu Lake
Misgurnus anguillicaudatus is a highly valued, aquaculture-relevant food fish in East Asian countries. Because of overfishing and environmental pollution, the number of wild Taihu loach has been sharply decreased in these years. In this study, the complete mitochondrial genome of Taihu loach was obt...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1467227 |
| _version_ | 1827774192093757440 |
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| author | Guosong Zhang Daoyu Zhu Xiaodong Li Xia Liang Kejun Cai Haili Zhang Guisheng Zhang |
| author_facet | Guosong Zhang Daoyu Zhu Xiaodong Li Xia Liang Kejun Cai Haili Zhang Guisheng Zhang |
| author_sort | Guosong Zhang |
| collection | DOAJ |
| description | Misgurnus anguillicaudatus is a highly valued, aquaculture-relevant food fish in East Asian countries. Because of overfishing and environmental pollution, the number of wild Taihu loach has been sharply decreased in these years. In this study, the complete mitochondrial genome of Taihu loach was obtained by PCR. The genome is 16,646 bp in length, including 2 ribosomal RNA genes. Thirteen proteins-coding genes, 22 transfer RNA genes, and a non-coding control region, the gene composition and order of which was similar to most reported from other vertebrates. Sequence analysis showed that the overall base composition is 29.8% for A, 28.2% for T, 25.7% for C, and 16.3% for G. The phylogenetic tree showed that Misgurnus family got together for one branch, which includes Taihu M. anguillicaudatus, and the other loaches had their own branches. Also the mitochondrial genome sequence of M. anguillicaudatus were aligned by BLAST, compared with Cobitinae the sequence similarity could reach >94%, and the similarity to Misgurnus was >99%. |
| first_indexed | 2024-03-11T13:35:07Z |
| format | Article |
| id | doaj.art-211a7d840bbe4e038b615990b0c11e58 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:35:07Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-211a7d840bbe4e038b615990b0c11e582023-11-02T15:57:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013256656710.1080/23802359.2018.14672271467227Complete mitochondrial genome of natural diploid loaches Misgurnus anguillicaudatus from the Taihu LakeGuosong Zhang0Daoyu Zhu1Xiaodong Li2Xia Liang3Kejun Cai4Haili Zhang5Guisheng Zhang6Heze UniversityHeze UniversityHechi UniversityHeze UniversityHuzhou UniversityHeze UniversityHeze UniversityMisgurnus anguillicaudatus is a highly valued, aquaculture-relevant food fish in East Asian countries. Because of overfishing and environmental pollution, the number of wild Taihu loach has been sharply decreased in these years. In this study, the complete mitochondrial genome of Taihu loach was obtained by PCR. The genome is 16,646 bp in length, including 2 ribosomal RNA genes. Thirteen proteins-coding genes, 22 transfer RNA genes, and a non-coding control region, the gene composition and order of which was similar to most reported from other vertebrates. Sequence analysis showed that the overall base composition is 29.8% for A, 28.2% for T, 25.7% for C, and 16.3% for G. The phylogenetic tree showed that Misgurnus family got together for one branch, which includes Taihu M. anguillicaudatus, and the other loaches had their own branches. Also the mitochondrial genome sequence of M. anguillicaudatus were aligned by BLAST, compared with Cobitinae the sequence similarity could reach >94%, and the similarity to Misgurnus was >99%.http://dx.doi.org/10.1080/23802359.2018.1467227taihu loachmisgurnusmitogenomeconservation |
| spellingShingle | Guosong Zhang Daoyu Zhu Xiaodong Li Xia Liang Kejun Cai Haili Zhang Guisheng Zhang Complete mitochondrial genome of natural diploid loaches Misgurnus anguillicaudatus from the Taihu Lake Mitochondrial DNA. Part B. Resources taihu loach misgurnus mitogenome conservation |
| title | Complete mitochondrial genome of natural diploid loaches Misgurnus anguillicaudatus from the Taihu Lake |
| title_full | Complete mitochondrial genome of natural diploid loaches Misgurnus anguillicaudatus from the Taihu Lake |
| title_fullStr | Complete mitochondrial genome of natural diploid loaches Misgurnus anguillicaudatus from the Taihu Lake |
| title_full_unstemmed | Complete mitochondrial genome of natural diploid loaches Misgurnus anguillicaudatus from the Taihu Lake |
| title_short | Complete mitochondrial genome of natural diploid loaches Misgurnus anguillicaudatus from the Taihu Lake |
| title_sort | complete mitochondrial genome of natural diploid loaches misgurnus anguillicaudatus from the taihu lake |
| topic | taihu loach misgurnus mitogenome conservation |
| url | http://dx.doi.org/10.1080/23802359.2018.1467227 |
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