First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications
The mitochondrial genome of Mesomelena mesomelaena (Loew, 1848) is the first to be sequenced in the flesh fly subfamily Miltogramminae (Diptera: Sarcophagidae). The 14,559 bp mitogenome contains 37 typical metazoan mitochondrial genes: 13 protein-coding genes, two ribosomal RNA genes and 22 transfer...
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Institute of Entomology, Biology Centre, Czech Academy of Science
2017-10-01
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| Series: | European Journal of Entomology |
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| Online Access: | https://www.eje.cz/artkey/eje-201701-0054_First_mitogenome_for_the_subfamily_Miltogramminae_Diptera_Sarcophagidae_and_its_phylogenetic_implications.php |
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| author | Liping YAN Ming ZHANG Yunyun GAO Thomas PAPE Dong ZHANG |
| author_facet | Liping YAN Ming ZHANG Yunyun GAO Thomas PAPE Dong ZHANG |
| author_sort | Liping YAN |
| collection | DOAJ |
| description | The mitochondrial genome of Mesomelena mesomelaena (Loew, 1848) is the first to be sequenced in the flesh fly subfamily Miltogramminae (Diptera: Sarcophagidae). The 14,559 bp mitogenome contains 37 typical metazoan mitochondrial genes: 13 protein-coding genes, two ribosomal RNA genes and 22 transfer RNA genes, with the same locations as in the insect ground plan. All the protein-coding genes have the start codon ATN, except for cox1 (TCG). Eight protein-coding genes have the stop codon TAA, while the remaining five have the stop codon T (cox1, cox2, nad5, and nad4) or TAG (cytb). Synonymous and non-synonymous substitution rates (Ks and Ka) for each protein-coding gene indicate that these genes evolved primarily under negative (or purifying) selection (Ka < Ks). Phylogeny of Sarcophagidae is proposed based on all the sarcophagid mitogenomes in GenBank, and the subfamily topology is reconstructed as (Sarcophaginae (Paramacronychiinae, Miltogramminae)). |
| first_indexed | 2024-12-17T03:00:14Z |
| format | Article |
| id | doaj.art-21e66bad76c847e09e497a148d6b73cc |
| institution | Directory Open Access Journal |
| issn | 1210-5759 1802-8829 |
| language | English |
| last_indexed | 2024-12-17T03:00:14Z |
| publishDate | 2017-10-01 |
| publisher | Institute of Entomology, Biology Centre, Czech Academy of Science |
| record_format | Article |
| series | European Journal of Entomology |
| spelling | doaj.art-21e66bad76c847e09e497a148d6b73cc2022-12-21T22:06:07ZengInstitute of Entomology, Biology Centre, Czech Academy of ScienceEuropean Journal of Entomology1210-57591802-88292017-10-01114142242910.14411/eje.2017.054eje-201701-0054First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implicationsLiping YAN0Ming ZHANG1Yunyun GAO2Thomas PAPE3Dong ZHANG4School of Nature Conservation, Beijing Forestry University, Beijing, China; e-mails: yanlp523@qq.com, zmbjfu@163.com, 424208072@qq.com, ernest8445@163.comSchool of Nature Conservation, Beijing Forestry University, Beijing, China; e-mails: yanlp523@qq.com, zmbjfu@163.com, 424208072@qq.com, ernest8445@163.comSchool of Nature Conservation, Beijing Forestry University, Beijing, China; e-mails: yanlp523@qq.com, zmbjfu@163.com, 424208072@qq.com, ernest8445@163.comNatural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark; e-mail: tpape@snm.ku.dkSchool of Nature Conservation, Beijing Forestry University, Beijing, China; e-mails: yanlp523@qq.com, zmbjfu@163.com, 424208072@qq.com, ernest8445@163.comThe mitochondrial genome of Mesomelena mesomelaena (Loew, 1848) is the first to be sequenced in the flesh fly subfamily Miltogramminae (Diptera: Sarcophagidae). The 14,559 bp mitogenome contains 37 typical metazoan mitochondrial genes: 13 protein-coding genes, two ribosomal RNA genes and 22 transfer RNA genes, with the same locations as in the insect ground plan. All the protein-coding genes have the start codon ATN, except for cox1 (TCG). Eight protein-coding genes have the stop codon TAA, while the remaining five have the stop codon T (cox1, cox2, nad5, and nad4) or TAG (cytb). Synonymous and non-synonymous substitution rates (Ks and Ka) for each protein-coding gene indicate that these genes evolved primarily under negative (or purifying) selection (Ka < Ks). Phylogeny of Sarcophagidae is proposed based on all the sarcophagid mitogenomes in GenBank, and the subfamily topology is reconstructed as (Sarcophaginae (Paramacronychiinae, Miltogramminae)).https://www.eje.cz/artkey/eje-201701-0054_First_mitogenome_for_the_subfamily_Miltogramminae_Diptera_Sarcophagidae_and_its_phylogenetic_implications.phpdipteracalyptrataesarcophagidaemiltogramminaemitogenomeflesh flyphylogeny |
| spellingShingle | Liping YAN Ming ZHANG Yunyun GAO Thomas PAPE Dong ZHANG First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications European Journal of Entomology diptera calyptratae sarcophagidae miltogramminae mitogenome flesh fly phylogeny |
| title | First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications |
| title_full | First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications |
| title_fullStr | First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications |
| title_full_unstemmed | First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications |
| title_short | First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications |
| title_sort | first mitogenome for the subfamily miltogramminae diptera sarcophagidae and its phylogenetic implications |
| topic | diptera calyptratae sarcophagidae miltogramminae mitogenome flesh fly phylogeny |
| url | https://www.eje.cz/artkey/eje-201701-0054_First_mitogenome_for_the_subfamily_Miltogramminae_Diptera_Sarcophagidae_and_its_phylogenetic_implications.php |
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