First report of the complete mitochondrial genome of Carpomya pardalina (Bigot) (Diptera: Tephritidae) and phylogenetic relationships with other Tephritidae
Carpomya pardalina is known for its potential invasiveness, which poses a significant and alarming threat to Cucurbitaceae crops. It is considered a highly perilous pest species that requires immediate attention for quarantine and prevention. Due to the challenges in distinguishing pests of the Teph...
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| Format: | Article |
| Language: | English |
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Elsevier
2024-04-01
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| Series: | Heliyon |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2405844024052642 |
| _version_ | 1797200781072400384 |
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| author | Xianting Guo Hualing Wang Kaiyun Fu Xinhua Ding Jianyu Deng Wenchao Guo Qiong Rao |
| author_facet | Xianting Guo Hualing Wang Kaiyun Fu Xinhua Ding Jianyu Deng Wenchao Guo Qiong Rao |
| author_sort | Xianting Guo |
| collection | DOAJ |
| description | Carpomya pardalina is known for its potential invasiveness, which poses a significant and alarming threat to Cucurbitaceae crops. It is considered a highly perilous pest species that requires immediate attention for quarantine and prevention. Due to the challenges in distinguishing pests of the Tephritidae family based on morphological characteristics, it is imperative to elucidate the mitochondrial genomic information of C. pardalina. In this study, the mitochondrial genome sequence of C. pardalina was determined and analyzed using next-generation sequencing. The results revealed that the mitogenome sequence had a total length of 16,257 bp, representing a typical circular molecule. It consisted of 13 PCGs, two rRNA genes, 22 tRNA genes and a non-coding region. The structure and organization of the mitochondrial genome of C. pardalina were found to be typical and similar to the published homologous sequences of other fruit flies in the Tephritidae family. Phylogenetic analysis confirmed that C. pardalina belongs to the Carpomya genus, which is consistent with traditional morphological taxonomy. Additionally, Carpomya and Rhagoletis were identified as sister groups. This study presents the first report of the complete mitochondrial genome of C. pardalina, which can serve as a valuable resource for future investigations in species diagnosis, evolutionary biology, prevention and control measures. |
| first_indexed | 2024-04-24T07:37:06Z |
| format | Article |
| id | doaj.art-22184831aeee4f08a916754b34a3765a |
| institution | Directory Open Access Journal |
| issn | 2405-8440 |
| language | English |
| last_indexed | 2024-04-24T07:37:06Z |
| publishDate | 2024-04-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Heliyon |
| spelling | doaj.art-22184831aeee4f08a916754b34a3765a2024-04-20T04:17:34ZengElsevierHeliyon2405-84402024-04-01108e29233First report of the complete mitochondrial genome of Carpomya pardalina (Bigot) (Diptera: Tephritidae) and phylogenetic relationships with other TephritidaeXianting Guo0Hualing Wang1Kaiyun Fu2Xinhua Ding3Jianyu Deng4Wenchao Guo5Qiong Rao6Key Lab for Biology of Crop Pathogens and Insect Pests and Their Ecological Regulation of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A & F University, Hangzhou, 311300, ChinaCollege of Forestry, Hebei Agricultural University, Baoding, 071000, Hebei, ChinaKey Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, Xinjiang Key Laboratory of Agricultural Bio-safety, Institute of Plant Protection, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, 830091, ChinaKey Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, Xinjiang Key Laboratory of Agricultural Bio-safety, Institute of Plant Protection, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, 830091, ChinaKey Lab for Biology of Crop Pathogens and Insect Pests and Their Ecological Regulation of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A & F University, Hangzhou, 311300, China; Corresponding author.Key Laboratory of Integrated Pest Management on Crops in Northwestern Oasis, Ministry of Agriculture and Rural Affairs, Xinjiang Key Laboratory of Agricultural Bio-safety, Institute of Plant Protection, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, 830091, China; Corresponding author.Key Lab for Biology of Crop Pathogens and Insect Pests and Their Ecological Regulation of Zhejiang Province, College of Advanced Agricultural Sciences, Zhejiang A & F University, Hangzhou, 311300, China; Corresponding author.Carpomya pardalina is known for its potential invasiveness, which poses a significant and alarming threat to Cucurbitaceae crops. It is considered a highly perilous pest species that requires immediate attention for quarantine and prevention. Due to the challenges in distinguishing pests of the Tephritidae family based on morphological characteristics, it is imperative to elucidate the mitochondrial genomic information of C. pardalina. In this study, the mitochondrial genome sequence of C. pardalina was determined and analyzed using next-generation sequencing. The results revealed that the mitogenome sequence had a total length of 16,257 bp, representing a typical circular molecule. It consisted of 13 PCGs, two rRNA genes, 22 tRNA genes and a non-coding region. The structure and organization of the mitochondrial genome of C. pardalina were found to be typical and similar to the published homologous sequences of other fruit flies in the Tephritidae family. Phylogenetic analysis confirmed that C. pardalina belongs to the Carpomya genus, which is consistent with traditional morphological taxonomy. Additionally, Carpomya and Rhagoletis were identified as sister groups. This study presents the first report of the complete mitochondrial genome of C. pardalina, which can serve as a valuable resource for future investigations in species diagnosis, evolutionary biology, prevention and control measures.http://www.sciencedirect.com/science/article/pii/S2405844024052642Mitochondrial genomePhylogenetic analysisTephritidaeCarpomya pardalina |
| spellingShingle | Xianting Guo Hualing Wang Kaiyun Fu Xinhua Ding Jianyu Deng Wenchao Guo Qiong Rao First report of the complete mitochondrial genome of Carpomya pardalina (Bigot) (Diptera: Tephritidae) and phylogenetic relationships with other Tephritidae Heliyon Mitochondrial genome Phylogenetic analysis Tephritidae Carpomya pardalina |
| title | First report of the complete mitochondrial genome of Carpomya pardalina (Bigot) (Diptera: Tephritidae) and phylogenetic relationships with other Tephritidae |
| title_full | First report of the complete mitochondrial genome of Carpomya pardalina (Bigot) (Diptera: Tephritidae) and phylogenetic relationships with other Tephritidae |
| title_fullStr | First report of the complete mitochondrial genome of Carpomya pardalina (Bigot) (Diptera: Tephritidae) and phylogenetic relationships with other Tephritidae |
| title_full_unstemmed | First report of the complete mitochondrial genome of Carpomya pardalina (Bigot) (Diptera: Tephritidae) and phylogenetic relationships with other Tephritidae |
| title_short | First report of the complete mitochondrial genome of Carpomya pardalina (Bigot) (Diptera: Tephritidae) and phylogenetic relationships with other Tephritidae |
| title_sort | first report of the complete mitochondrial genome of carpomya pardalina bigot diptera tephritidae and phylogenetic relationships with other tephritidae |
| topic | Mitochondrial genome Phylogenetic analysis Tephritidae Carpomya pardalina |
| url | http://www.sciencedirect.com/science/article/pii/S2405844024052642 |
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