The wPDI Redox Cycle Coupled Conformational Change of the Repetitive Domain of the HMW-GS 1Dx5—A Computational Study
The repetitive sequence of glutenin plays an important role in dough rheology; however, its interaction with wheat protein disulfide isomerase (wPDI) remains unclear. In this study, the conformations of wild type glutenin repetitive sequence (WRS) from the high molecular weight glutenin subunit (HMW...
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MDPI AG
2020-09-01
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| Series: | Molecules |
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| Online Access: | https://www.mdpi.com/1420-3049/25/19/4393 |
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| author | Jihui Gao Peixuan Yu Hongrui Liang Jiahui Fu Ziyue Luo Dong Yang |
| author_facet | Jihui Gao Peixuan Yu Hongrui Liang Jiahui Fu Ziyue Luo Dong Yang |
| author_sort | Jihui Gao |
| collection | DOAJ |
| description | The repetitive sequence of glutenin plays an important role in dough rheology; however, its interaction with wheat protein disulfide isomerase (wPDI) remains unclear. In this study, the conformations of wild type glutenin repetitive sequence (WRS) from the high molecular weight glutenin subunit (HMW-GS) 1Dx5, an artificially designed glutenin repetitive sequence (DRS) of which the amino acid composition is the same but the primary structure is different, and wPDI under different redox states were simulated. The molecular interactions between the aforementioned repetitive sequences with wPDI under different redox states were further investigated. The results indicated that the repetitive sequences bind to the b and b′ domains of an “open”, oxidized wPDI (wPDI<sup>O</sup>) which serves as the acceptor state of substrate. The repetitive sequence is partially folded (compressed) in wPDI<sup>O</sup>, and is further folded in the thermodynamically favored, subsequent conformational transition of wPDI<sup>O</sup> to reduced wPDI (wPDI<sup>R</sup>). Compared with the artificially designed one, the naturally designed repetitive sequence is better recognized and more intensively folded by wPDI for its later unfold as the molecular basis of dough extension. |
| first_indexed | 2024-03-10T16:04:24Z |
| format | Article |
| id | doaj.art-22541b5644ed45e49cc6257ce1daef1d |
| institution | Directory Open Access Journal |
| issn | 1420-3049 |
| language | English |
| last_indexed | 2024-03-10T16:04:24Z |
| publishDate | 2020-09-01 |
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| record_format | Article |
| series | Molecules |
| spelling | doaj.art-22541b5644ed45e49cc6257ce1daef1d2023-11-20T15:01:24ZengMDPI AGMolecules1420-30492020-09-012519439310.3390/molecules25194393The wPDI Redox Cycle Coupled Conformational Change of the Repetitive Domain of the HMW-GS 1Dx5—A Computational StudyJihui Gao0Peixuan Yu1Hongrui Liang2Jiahui Fu3Ziyue Luo4Dong Yang5Beijing Key Laboratory of Functional Food from Plant Resources, College of Food Science & Nutritional Engineering, China Agricultural University, 17 East Tsinghua Rd., Beijing 100083, ChinaBeijing Key Laboratory of Functional Food from Plant Resources, College of Food Science & Nutritional Engineering, China Agricultural University, 17 East Tsinghua Rd., Beijing 100083, ChinaBeijing Key Laboratory of Functional Food from Plant Resources, College of Food Science & Nutritional Engineering, China Agricultural University, 17 East Tsinghua Rd., Beijing 100083, ChinaBeijing Key Laboratory of Functional Food from Plant Resources, College of Food Science & Nutritional Engineering, China Agricultural University, 17 East Tsinghua Rd., Beijing 100083, ChinaBeijing Key Laboratory of Functional Food from Plant Resources, College of Food Science & Nutritional Engineering, China Agricultural University, 17 East Tsinghua Rd., Beijing 100083, ChinaBeijing Key Laboratory of Functional Food from Plant Resources, College of Food Science & Nutritional Engineering, China Agricultural University, 17 East Tsinghua Rd., Beijing 100083, ChinaThe repetitive sequence of glutenin plays an important role in dough rheology; however, its interaction with wheat protein disulfide isomerase (wPDI) remains unclear. In this study, the conformations of wild type glutenin repetitive sequence (WRS) from the high molecular weight glutenin subunit (HMW-GS) 1Dx5, an artificially designed glutenin repetitive sequence (DRS) of which the amino acid composition is the same but the primary structure is different, and wPDI under different redox states were simulated. The molecular interactions between the aforementioned repetitive sequences with wPDI under different redox states were further investigated. The results indicated that the repetitive sequences bind to the b and b′ domains of an “open”, oxidized wPDI (wPDI<sup>O</sup>) which serves as the acceptor state of substrate. The repetitive sequence is partially folded (compressed) in wPDI<sup>O</sup>, and is further folded in the thermodynamically favored, subsequent conformational transition of wPDI<sup>O</sup> to reduced wPDI (wPDI<sup>R</sup>). Compared with the artificially designed one, the naturally designed repetitive sequence is better recognized and more intensively folded by wPDI for its later unfold as the molecular basis of dough extension.https://www.mdpi.com/1420-3049/25/19/4393wPDIredox cyclehigh molecular weight glutenin subunitrepetitive sequencefolding |
| spellingShingle | Jihui Gao Peixuan Yu Hongrui Liang Jiahui Fu Ziyue Luo Dong Yang The wPDI Redox Cycle Coupled Conformational Change of the Repetitive Domain of the HMW-GS 1Dx5—A Computational Study Molecules wPDI redox cycle high molecular weight glutenin subunit repetitive sequence folding |
| title | The wPDI Redox Cycle Coupled Conformational Change of the Repetitive Domain of the HMW-GS 1Dx5—A Computational Study |
| title_full | The wPDI Redox Cycle Coupled Conformational Change of the Repetitive Domain of the HMW-GS 1Dx5—A Computational Study |
| title_fullStr | The wPDI Redox Cycle Coupled Conformational Change of the Repetitive Domain of the HMW-GS 1Dx5—A Computational Study |
| title_full_unstemmed | The wPDI Redox Cycle Coupled Conformational Change of the Repetitive Domain of the HMW-GS 1Dx5—A Computational Study |
| title_short | The wPDI Redox Cycle Coupled Conformational Change of the Repetitive Domain of the HMW-GS 1Dx5—A Computational Study |
| title_sort | wpdi redox cycle coupled conformational change of the repetitive domain of the hmw gs 1dx5 a computational study |
| topic | wPDI redox cycle high molecular weight glutenin subunit repetitive sequence folding |
| url | https://www.mdpi.com/1420-3049/25/19/4393 |
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