The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.)
Kohlrabi (Brassica oleracea var. gongylodes L.) is an important dietary rhizome vegetable in the Brassicaceae family. However, to date, few mitochondrial genomic resources have been reported for kohlrabi. In this study, we obtained the complete mitochondrial DNA sequence of 219,964 bp from an indivi...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-09-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1966341 |
| _version_ | 1797638767098462208 |
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| author | Dengkui Shao Yidong Ma Xiaojuan Li Sang Ga Yanjing Ren |
| author_facet | Dengkui Shao Yidong Ma Xiaojuan Li Sang Ga Yanjing Ren |
| author_sort | Dengkui Shao |
| collection | DOAJ |
| description | Kohlrabi (Brassica oleracea var. gongylodes L.) is an important dietary rhizome vegetable in the Brassicaceae family. However, to date, few mitochondrial genomic resources have been reported for kohlrabi. In this study, we obtained the complete mitochondrial DNA sequence of 219,964 bp from an individual green kohlrabi. A total of 61 genes were annotated, including 33 protein-coding genes, 23 transfer RNA genes, three ribosomal RNA genes, and two pseudo genes. In addition, 1,001 open reading frames and five RNA editing sites were annotated. Relative synonymous codon usage analysis revealed significant difference in usage frequency of synonymous codon. Phylogenetic inference showed that kohlrabi is closely related to B. oleracea var. botrytis. This study provides a good foundation for further understanding the relationship and evolutionary origins among Brassicaceae crops. |
| first_indexed | 2024-03-11T13:07:14Z |
| format | Article |
| id | doaj.art-22ca676bea1b48868bfcf2b4d5b4e9d4 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:14Z |
| publishDate | 2021-09-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-22ca676bea1b48868bfcf2b4d5b4e9d42023-11-03T14:28:30ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-09-01692714271610.1080/23802359.2021.19663411966341The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.)Dengkui Shao0Yidong Ma1Xiaojuan Li2Sang Ga3Yanjing Ren4Qinghai University (Qinghai Academy of Agriculture and Forestry Sciences)Qinghai University (Qinghai Academy of Agriculture and Forestry Sciences)Qinghai University (Qinghai Academy of Agriculture and Forestry Sciences)Comprehensive Agriculture and Animal Husbandry Service Center of Yushu Tibetan Autonomous PrefectureQinghai University (Qinghai Academy of Agriculture and Forestry Sciences)Kohlrabi (Brassica oleracea var. gongylodes L.) is an important dietary rhizome vegetable in the Brassicaceae family. However, to date, few mitochondrial genomic resources have been reported for kohlrabi. In this study, we obtained the complete mitochondrial DNA sequence of 219,964 bp from an individual green kohlrabi. A total of 61 genes were annotated, including 33 protein-coding genes, 23 transfer RNA genes, three ribosomal RNA genes, and two pseudo genes. In addition, 1,001 open reading frames and five RNA editing sites were annotated. Relative synonymous codon usage analysis revealed significant difference in usage frequency of synonymous codon. Phylogenetic inference showed that kohlrabi is closely related to B. oleracea var. botrytis. This study provides a good foundation for further understanding the relationship and evolutionary origins among Brassicaceae crops.http://dx.doi.org/10.1080/23802359.2021.1966341kohlrabimitochondrial genomegenome structurephylogenetic analysis |
| spellingShingle | Dengkui Shao Yidong Ma Xiaojuan Li Sang Ga Yanjing Ren The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.) Mitochondrial DNA. Part B. Resources kohlrabi mitochondrial genome genome structure phylogenetic analysis |
| title | The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.) |
| title_full | The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.) |
| title_fullStr | The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.) |
| title_full_unstemmed | The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.) |
| title_short | The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.) |
| title_sort | sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi brassica oleracea var gongylodes l |
| topic | kohlrabi mitochondrial genome genome structure phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1966341 |
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