Comparative analysis of microbial community structure in different times of Panax ginseng Rhizosphere microbiome and soil properties under larch forest
Abstract Background Panax ginseng cultivated under the forest is popular because its shape and effective ingredients are similar to wild ginseng. The growth of P. ginseng in the larch forest is generally better than in the broad-leaved forest, and the incidence rate of diseases is low. Therefore, th...
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| Format: | Article |
| Language: | English |
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BMC
2023-09-01
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| Series: | BMC Genomic Data |
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| Online Access: | https://doi.org/10.1186/s12863-023-01154-1 |
| _version_ | 1797556075983011840 |
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| author | Tong Aizi Liu Lijuan Liu Lihua Liu Wei Qin Jiamei |
| author_facet | Tong Aizi Liu Lijuan Liu Lihua Liu Wei Qin Jiamei |
| author_sort | Tong Aizi |
| collection | DOAJ |
| description | Abstract Background Panax ginseng cultivated under the forest is popular because its shape and effective ingredients are similar to wild ginseng. The growth of P. ginseng in the larch forest is generally better than in the broad-leaved forest, and the incidence rate of diseases is low. Therefore, the selection of forest species is one of the basic factors in the successful cropping of P. ginseng. Methods Illumina HiSeq high-throughput sequencing was used to analyze the 16S rRNA/ITS gene sequence of P. ginseng rhizosphere soil under larch forest to study the rhizosphere microbiome's diversity and community composition structure. Results The species classification and richness of rhizosphere bacterial and fungal communities in the same-aged P. ginseng were similar. Consistent with the soil system of commonly cultivated crops, Proteobacteria, Actinobacteriota, Acidobacteriota, Verrucomicrobiota, Chloroflexi, and Basidiomycota, Ascomycota were the dominant phylum of bacteria and fungi, respectively. Compared with the soil without planting P. ginseng, the diversity of microorganisms and community structure of continuous planting for 2 years, 5 years, and 18 years of P. ginseng rhizosphere soil had little change. The accumulation levels of Ilyonectria, Fusarium, Gibberella, and Cylindrocarpon were not significantly increased with planting P. ginseng and the increased age of cropping P. ginseng. Conclusions The results of this study showed that the soil function of the larch forest was good, which provided a theoretical basis for the land selection and soil improvement of cultivating P. ginseng under the larch forest. |
| first_indexed | 2024-03-10T16:57:37Z |
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| id | doaj.art-235fb737bfa249fd9fe1cd4d56a2af75 |
| institution | Directory Open Access Journal |
| issn | 2730-6844 |
| language | English |
| last_indexed | 2024-03-10T16:57:37Z |
| publishDate | 2023-09-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomic Data |
| spelling | doaj.art-235fb737bfa249fd9fe1cd4d56a2af752023-11-20T11:05:17ZengBMCBMC Genomic Data2730-68442023-09-0124111510.1186/s12863-023-01154-1Comparative analysis of microbial community structure in different times of Panax ginseng Rhizosphere microbiome and soil properties under larch forestTong Aizi0Liu Lijuan1Liu Lihua2Liu Wei3Qin Jiamei4Key Laboratory of Evaluation and Application of Changbai Mountain Biological Germplasm Resources of Jilin Province, College of Life Science, Tonghua Normal UniversityKey Laboratory of Evaluation and Application of Changbai Mountain Biological Germplasm Resources of Jilin Province, College of Life Science, Tonghua Normal UniversityKey Laboratory of Evaluation and Application of Changbai Mountain Biological Germplasm Resources of Jilin Province, College of Life Science, Tonghua Normal UniversityKey Laboratory of Evaluation and Application of Changbai Mountain Biological Germplasm Resources of Jilin Province, College of Life Science, Tonghua Normal UniversityKey Laboratory of Evaluation and Application of Changbai Mountain Biological Germplasm Resources of Jilin Province, College of Life Science, Tonghua Normal UniversityAbstract Background Panax ginseng cultivated under the forest is popular because its shape and effective ingredients are similar to wild ginseng. The growth of P. ginseng in the larch forest is generally better than in the broad-leaved forest, and the incidence rate of diseases is low. Therefore, the selection of forest species is one of the basic factors in the successful cropping of P. ginseng. Methods Illumina HiSeq high-throughput sequencing was used to analyze the 16S rRNA/ITS gene sequence of P. ginseng rhizosphere soil under larch forest to study the rhizosphere microbiome's diversity and community composition structure. Results The species classification and richness of rhizosphere bacterial and fungal communities in the same-aged P. ginseng were similar. Consistent with the soil system of commonly cultivated crops, Proteobacteria, Actinobacteriota, Acidobacteriota, Verrucomicrobiota, Chloroflexi, and Basidiomycota, Ascomycota were the dominant phylum of bacteria and fungi, respectively. Compared with the soil without planting P. ginseng, the diversity of microorganisms and community structure of continuous planting for 2 years, 5 years, and 18 years of P. ginseng rhizosphere soil had little change. The accumulation levels of Ilyonectria, Fusarium, Gibberella, and Cylindrocarpon were not significantly increased with planting P. ginseng and the increased age of cropping P. ginseng. Conclusions The results of this study showed that the soil function of the larch forest was good, which provided a theoretical basis for the land selection and soil improvement of cultivating P. ginseng under the larch forest.https://doi.org/10.1186/s12863-023-01154-1Larch forestForest ginsengRhizosphere microorganismsDiversityCommunity composition |
| spellingShingle | Tong Aizi Liu Lijuan Liu Lihua Liu Wei Qin Jiamei Comparative analysis of microbial community structure in different times of Panax ginseng Rhizosphere microbiome and soil properties under larch forest BMC Genomic Data Larch forest Forest ginseng Rhizosphere microorganisms Diversity Community composition |
| title | Comparative analysis of microbial community structure in different times of Panax ginseng Rhizosphere microbiome and soil properties under larch forest |
| title_full | Comparative analysis of microbial community structure in different times of Panax ginseng Rhizosphere microbiome and soil properties under larch forest |
| title_fullStr | Comparative analysis of microbial community structure in different times of Panax ginseng Rhizosphere microbiome and soil properties under larch forest |
| title_full_unstemmed | Comparative analysis of microbial community structure in different times of Panax ginseng Rhizosphere microbiome and soil properties under larch forest |
| title_short | Comparative analysis of microbial community structure in different times of Panax ginseng Rhizosphere microbiome and soil properties under larch forest |
| title_sort | comparative analysis of microbial community structure in different times of panax ginseng rhizosphere microbiome and soil properties under larch forest |
| topic | Larch forest Forest ginseng Rhizosphere microorganisms Diversity Community composition |
| url | https://doi.org/10.1186/s12863-023-01154-1 |
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