Characterization of the complete chloroplast genome of the endangered Chinese species Cymbidium lowianum (Rchb.f.) Rchb.f.
Cymbidium lowianum (Rchb.f.) Rchb.f. is a Class I endangered species in China with important ornamental, economic, and breeding value, especially wild C. lowianum. This study used Illumina high-throughput sequencing technologies to sequence and analyze the complete chloroplast genome of C. lowianum....
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1815603 |
| _version_ | 1797639055125512192 |
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| author | Longjie Cheng Yuying Wang Yiran Zhao Yefang Li Fengmei He Zhilin Li |
| author_facet | Longjie Cheng Yuying Wang Yiran Zhao Yefang Li Fengmei He Zhilin Li |
| author_sort | Longjie Cheng |
| collection | DOAJ |
| description | Cymbidium lowianum (Rchb.f.) Rchb.f. is a Class I endangered species in China with important ornamental, economic, and breeding value, especially wild C. lowianum. This study used Illumina high-throughput sequencing technologies to sequence and analyze the complete chloroplast genome of C. lowianum. The genome features of C. lowianum and the phylogenetic relationships among Orchidaceae species were reported and established. The complete chloroplast genome is 155,447 bp long, consisting of a pair of inverse duplication regions that are 26,710 bp long, a large single-copy region of 84,184 bp, and a small single-copy region of 17,843 bp. The entire genome contains 74 mRNA genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic tree of 24 Orchidaceae species revealed Cymbidium lowianum is more closely related to Cymbidium erythraeum. |
| first_indexed | 2024-03-11T13:12:19Z |
| format | Article |
| id | doaj.art-245333290d5c4bfda2df8a10e799ef04 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:12:19Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-245333290d5c4bfda2df8a10e799ef042023-11-03T14:00:33ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533318331910.1080/23802359.2020.18156031815603Characterization of the complete chloroplast genome of the endangered Chinese species Cymbidium lowianum (Rchb.f.) Rchb.f.Longjie Cheng0Yuying Wang1Yiran Zhao2Yefang Li3Fengmei He4Zhilin Li5College of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCollege of Horticulture and Landscape, Yunnan Agricultural UniversityCymbidium lowianum (Rchb.f.) Rchb.f. is a Class I endangered species in China with important ornamental, economic, and breeding value, especially wild C. lowianum. This study used Illumina high-throughput sequencing technologies to sequence and analyze the complete chloroplast genome of C. lowianum. The genome features of C. lowianum and the phylogenetic relationships among Orchidaceae species were reported and established. The complete chloroplast genome is 155,447 bp long, consisting of a pair of inverse duplication regions that are 26,710 bp long, a large single-copy region of 84,184 bp, and a small single-copy region of 17,843 bp. The entire genome contains 74 mRNA genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic tree of 24 Orchidaceae species revealed Cymbidium lowianum is more closely related to Cymbidium erythraeum.http://dx.doi.org/10.1080/23802359.2020.1815603cymbidium lowianumchloroplast genomeendangered speciesphylogenetic analysis |
| spellingShingle | Longjie Cheng Yuying Wang Yiran Zhao Yefang Li Fengmei He Zhilin Li Characterization of the complete chloroplast genome of the endangered Chinese species Cymbidium lowianum (Rchb.f.) Rchb.f. Mitochondrial DNA. Part B. Resources cymbidium lowianum chloroplast genome endangered species phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of the endangered Chinese species Cymbidium lowianum (Rchb.f.) Rchb.f. |
| title_full | Characterization of the complete chloroplast genome of the endangered Chinese species Cymbidium lowianum (Rchb.f.) Rchb.f. |
| title_fullStr | Characterization of the complete chloroplast genome of the endangered Chinese species Cymbidium lowianum (Rchb.f.) Rchb.f. |
| title_full_unstemmed | Characterization of the complete chloroplast genome of the endangered Chinese species Cymbidium lowianum (Rchb.f.) Rchb.f. |
| title_short | Characterization of the complete chloroplast genome of the endangered Chinese species Cymbidium lowianum (Rchb.f.) Rchb.f. |
| title_sort | characterization of the complete chloroplast genome of the endangered chinese species cymbidium lowianum rchb f rchb f |
| topic | cymbidium lowianum chloroplast genome endangered species phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1815603 |
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