The complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii Brandt, 1858), from South Korea
In this study, we use a specimen from wild-caught individual to determine the complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii). The complete mitogenome of P. maackii has 16,258 bp in length and consists of 13 protein-coding genes (PCGs), 22 tRNAs, two rRNAs, and one...
| Main Authors: | , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2022-03-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2051759 |
| _version_ | 1797638624614809600 |
|---|---|
| author | Hae-jun Baek Philjae Kim Young-Chae Kim Areum Kim Suhwan Kim Mi-Sook Min Hang Lee |
| author_facet | Hae-jun Baek Philjae Kim Young-Chae Kim Areum Kim Suhwan Kim Mi-Sook Min Hang Lee |
| author_sort | Hae-jun Baek |
| collection | DOAJ |
| description | In this study, we use a specimen from wild-caught individual to determine the complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii). The complete mitogenome of P. maackii has 16,258 bp in length and consists of 13 protein-coding genes (PCGs), 22 tRNAs, two rRNAs, and one control region. The arrangement of genes of P. maackii is identical with previously reported mitogenomes in the family Trionychoidea. According to our result, the ML tree for the phylogenetic reconstruction revealed that the individuals used in present study is closely related with the previously reported sequences of P. sinensis (AY962573 and MG431983) in p-distance 0.7% and 2.5%. |
| first_indexed | 2024-03-11T13:06:15Z |
| format | Article |
| id | doaj.art-2488c73877b242f58268cc503a181b03 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:15Z |
| publishDate | 2022-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2488c73877b242f58268cc503a181b032023-11-03T14:36:02ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-03-017349850010.1080/23802359.2022.20517592051759The complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii Brandt, 1858), from South KoreaHae-jun Baek0Philjae Kim1Young-Chae Kim2Areum Kim3Suhwan Kim4Mi-Sook Min5Hang Lee6Conservation Genome Resources Bank for Korean Wildlife (CGRB) and Research Institute for Veterinary Science College of Veterinary Medicine, Seoul National UniversityInvasive Alien Species Research Team, Bureau of Survey and Safety Research, National Institute of EcologyMammal Research Team, Research Center for Endangered Species, National Institute of EcologyMammal Research Team, Research Center for Endangered Species, National Institute of EcologyInvasive Alien Species Research Team, Bureau of Survey and Safety Research, National Institute of EcologyConservation Genome Resources Bank for Korean Wildlife (CGRB) and Research Institute for Veterinary Science College of Veterinary Medicine, Seoul National UniversityConservation Genome Resources Bank for Korean Wildlife (CGRB) and Research Institute for Veterinary Science College of Veterinary Medicine, Seoul National UniversityIn this study, we use a specimen from wild-caught individual to determine the complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii). The complete mitogenome of P. maackii has 16,258 bp in length and consists of 13 protein-coding genes (PCGs), 22 tRNAs, two rRNAs, and one control region. The arrangement of genes of P. maackii is identical with previously reported mitogenomes in the family Trionychoidea. According to our result, the ML tree for the phylogenetic reconstruction revealed that the individuals used in present study is closely related with the previously reported sequences of P. sinensis (AY962573 and MG431983) in p-distance 0.7% and 2.5%.http://dx.doi.org/10.1080/23802359.2022.2051759pelodiscus maackiiamur soft-shelled turtlekorean peninsulacomplete mitogenome |
| spellingShingle | Hae-jun Baek Philjae Kim Young-Chae Kim Areum Kim Suhwan Kim Mi-Sook Min Hang Lee The complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii Brandt, 1858), from South Korea Mitochondrial DNA. Part B. Resources pelodiscus maackii amur soft-shelled turtle korean peninsula complete mitogenome |
| title | The complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii Brandt, 1858), from South Korea |
| title_full | The complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii Brandt, 1858), from South Korea |
| title_fullStr | The complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii Brandt, 1858), from South Korea |
| title_full_unstemmed | The complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii Brandt, 1858), from South Korea |
| title_short | The complete mitochondrial genome of the Amur soft-shelled turtle (Pelodiscus maackii Brandt, 1858), from South Korea |
| title_sort | complete mitochondrial genome of the amur soft shelled turtle pelodiscus maackii brandt 1858 from south korea |
| topic | pelodiscus maackii amur soft-shelled turtle korean peninsula complete mitogenome |
| url | http://dx.doi.org/10.1080/23802359.2022.2051759 |
| work_keys_str_mv | AT haejunbaek thecompletemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT philjaekim thecompletemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT youngchaekim thecompletemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT areumkim thecompletemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT suhwankim thecompletemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT misookmin thecompletemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT hanglee thecompletemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT haejunbaek completemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT philjaekim completemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT youngchaekim completemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT areumkim completemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT suhwankim completemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT misookmin completemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea AT hanglee completemitochondrialgenomeoftheamursoftshelledturtlepelodiscusmaackiibrandt1858fromsouthkorea |