Species tree inference by minimizing deep coalescences.
In a 1997 seminal paper, W. Maddison proposed minimizing deep coalescences, or MDC, as an optimization criterion for inferring the species tree from a set of incongruent gene trees, assuming the incongruence is exclusively due to lineage sorting. In a subsequent paper, Maddison and Knowles provided...
Main Authors: | Cuong Than, Luay Nakhleh |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2009-09-01
|
Series: | PLoS Computational Biology |
Online Access: | http://europepmc.org/articles/PMC2729383?pdf=render |
Similar Items
-
Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent.
by: Dingqiao Wen, et al.
Published: (2016-05-01) -
Correction: Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent.
by: Dingqiao Wen, et al.
Published: (2017-02-01) -
Impact of deep coalescence on the reliability of species tree inference from different types of DNA markers in mammals.
by: Alejandro Sánchez-Gracia, et al.
Published: (2012-01-01) -
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
by: Nakhleh Luay, et al.
Published: (2008-07-01) -
TINNiK: inference of the tree of blobs of a species network under the coalescent model
by: Elizabeth S. Allman, et al.
Published: (2024-11-01)