The complete chloroplast genome sequence of Hibiscus coccineus
Hibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the comp...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2022-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.2022545 |
| _version_ | 1797638624861224960 |
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| author | Zhiquan Wang Hong Yang Fengjiao Zhang Yunlong Yin Chunsun Gu |
| author_facet | Zhiquan Wang Hong Yang Fengjiao Zhang Yunlong Yin Chunsun Gu |
| author_sort | Zhiquan Wang |
| collection | DOAJ |
| description | Hibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the complete chloroplast genome sequence, which will provide more genomic information for studying the genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 160,280 bp, composed of a large single-copy (LSC) region of 89,121 bp, a small single-copy (SSC) region of 18,673 bp, and two inverted repeats (IRs) of 26,243 bp. A total of 113 genes were annotated, including 79 protein-coding genes, 30 tRNA, and four rRNA genes. Phylogenetic tree analysis revealed that the Hibiscus coccineus is closest to Hibiscus mutabilis in the Hibiscus L. |
| first_indexed | 2024-03-11T13:06:15Z |
| format | Article |
| id | doaj.art-25c09593777d481e8dcf9029b6d30878 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:15Z |
| publishDate | 2022-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-25c09593777d481e8dcf9029b6d308782023-11-03T14:36:01ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-01-017121721810.1080/23802359.2021.20225452022545The complete chloroplast genome sequence of Hibiscus coccineusZhiquan Wang0Hong Yang1Fengjiao Zhang2Yunlong Yin3Chunsun Gu4Institute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesInstitute of Botany, Jiangsu Province and Chinese Academy of SciencesHibiscus coccineus is famous for its wide geographical distribution and the showy flowers of scarlet rose mallow. It belongs to the Malvaceae family and has greatly ornamental and ecological value. In this study, high-throughput sequencing and bioinformatics technology were used to assemble the complete chloroplast genome sequence, which will provide more genomic information for studying the genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 160,280 bp, composed of a large single-copy (LSC) region of 89,121 bp, a small single-copy (SSC) region of 18,673 bp, and two inverted repeats (IRs) of 26,243 bp. A total of 113 genes were annotated, including 79 protein-coding genes, 30 tRNA, and four rRNA genes. Phylogenetic tree analysis revealed that the Hibiscus coccineus is closest to Hibiscus mutabilis in the Hibiscus L.http://dx.doi.org/10.1080/23802359.2021.2022545hibiscus coccineuscomplete chloroplast genomephylogenetic analysis |
| spellingShingle | Zhiquan Wang Hong Yang Fengjiao Zhang Yunlong Yin Chunsun Gu The complete chloroplast genome sequence of Hibiscus coccineus Mitochondrial DNA. Part B. Resources hibiscus coccineus complete chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome sequence of Hibiscus coccineus |
| title_full | The complete chloroplast genome sequence of Hibiscus coccineus |
| title_fullStr | The complete chloroplast genome sequence of Hibiscus coccineus |
| title_full_unstemmed | The complete chloroplast genome sequence of Hibiscus coccineus |
| title_short | The complete chloroplast genome sequence of Hibiscus coccineus |
| title_sort | complete chloroplast genome sequence of hibiscus coccineus |
| topic | hibiscus coccineus complete chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.2022545 |
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