Chloroplast genomes of Vitis sp. samples from Nechaevsk population of the Krasnodar region
The presented study demonstrates the results of sequencing and analysis of wild grape plastomes assemblies located in the Nechaevsk population. Previously, the habitats of the wild forest grape V. vinifera subsp. silvestris were explored as an outcome of expeditions. As a result of repeated expediti...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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EDP Sciences
2023-01-01
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| Series: | BIO Web of Conferences |
| Online Access: | https://www.bio-conferences.org/articles/bioconf/pdf/2023/23/bioconf_mtsitvw2023_02001.pdf |
| _version_ | 1797353100354256896 |
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| author | Zvyagin Andrej Savenkova Daria Elisyutikova Anastasia Troshin Leonid |
| author_facet | Zvyagin Andrej Savenkova Daria Elisyutikova Anastasia Troshin Leonid |
| author_sort | Zvyagin Andrej |
| collection | DOAJ |
| description | The presented study demonstrates the results of sequencing and analysis of wild grape plastomes assemblies located in the Nechaevsk population. Previously, the habitats of the wild forest grape V. vinifera subsp. silvestris were explored as an outcome of expeditions. As a result of repeated expeditions, samples were taken and used to isolate chloroplast DNA. Assembly and annotation of plastomes showed the presence of DNA encoding sequences. At the same time, the structure of the obtained plastomes varied. These expressed in the presence of DNA polymorphisms. Comparison of the aligned sequences made it possible to reveal the presence of the species V. vinifera subsp. sylvestris in the population, as well as hybrid specimens. This is also confirmed by the result of determining the taxonomy after depositing the archives of readings in the NCBI database. |
| first_indexed | 2024-03-08T13:26:16Z |
| format | Article |
| id | doaj.art-274a4867b19f4929a71d474e90facaf0 |
| institution | Directory Open Access Journal |
| issn | 2117-4458 |
| language | English |
| last_indexed | 2024-03-08T13:26:16Z |
| publishDate | 2023-01-01 |
| publisher | EDP Sciences |
| record_format | Article |
| series | BIO Web of Conferences |
| spelling | doaj.art-274a4867b19f4929a71d474e90facaf02024-01-17T14:57:09ZengEDP SciencesBIO Web of Conferences2117-44582023-01-01780200110.1051/bioconf/20237802001bioconf_mtsitvw2023_02001Chloroplast genomes of Vitis sp. samples from Nechaevsk population of the Krasnodar regionZvyagin Andrej0Savenkova Daria1Elisyutikova Anastasia2Troshin Leonid3Department of Viticulture, Kuban State Agrarian University named after I.T. TrubilinLaboratory of Plant and Animal genetics, Kuban State Agrarian University named after I.T. TrubilinLaboratory of Plant and Animal genetics, Kuban State Agrarian University named after I.T. TrubilinDepartment of Viticulture, Kuban State Agrarian University named after I.T. TrubilinThe presented study demonstrates the results of sequencing and analysis of wild grape plastomes assemblies located in the Nechaevsk population. Previously, the habitats of the wild forest grape V. vinifera subsp. silvestris were explored as an outcome of expeditions. As a result of repeated expeditions, samples were taken and used to isolate chloroplast DNA. Assembly and annotation of plastomes showed the presence of DNA encoding sequences. At the same time, the structure of the obtained plastomes varied. These expressed in the presence of DNA polymorphisms. Comparison of the aligned sequences made it possible to reveal the presence of the species V. vinifera subsp. sylvestris in the population, as well as hybrid specimens. This is also confirmed by the result of determining the taxonomy after depositing the archives of readings in the NCBI database.https://www.bio-conferences.org/articles/bioconf/pdf/2023/23/bioconf_mtsitvw2023_02001.pdf |
| spellingShingle | Zvyagin Andrej Savenkova Daria Elisyutikova Anastasia Troshin Leonid Chloroplast genomes of Vitis sp. samples from Nechaevsk population of the Krasnodar region BIO Web of Conferences |
| title | Chloroplast genomes of Vitis sp. samples from Nechaevsk population of the Krasnodar region |
| title_full | Chloroplast genomes of Vitis sp. samples from Nechaevsk population of the Krasnodar region |
| title_fullStr | Chloroplast genomes of Vitis sp. samples from Nechaevsk population of the Krasnodar region |
| title_full_unstemmed | Chloroplast genomes of Vitis sp. samples from Nechaevsk population of the Krasnodar region |
| title_short | Chloroplast genomes of Vitis sp. samples from Nechaevsk population of the Krasnodar region |
| title_sort | chloroplast genomes of vitis sp samples from nechaevsk population of the krasnodar region |
| url | https://www.bio-conferences.org/articles/bioconf/pdf/2023/23/bioconf_mtsitvw2023_02001.pdf |
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