Challenges and Approaches in Microbiome Research: From Fundamental to Applied

We face major agricultural challenges that remain a threat for global food security. Soil microbes harbor enormous potentials to provide sustainable and economically favorable solutions that could introduce novel approaches to improve agricultural practices and, hence, crop productivity. In this rev...

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Main Authors: Chrysi Sergaki, Beatriz Lagunas, Ian Lidbury, Miriam L. Gifford, Patrick Schäfer
Format: Article
Language:English
Published: Frontiers Media S.A. 2018-08-01
Series:Frontiers in Plant Science
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fpls.2018.01205/full
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author Chrysi Sergaki
Beatriz Lagunas
Ian Lidbury
Miriam L. Gifford
Miriam L. Gifford
Patrick Schäfer
Patrick Schäfer
author_facet Chrysi Sergaki
Beatriz Lagunas
Ian Lidbury
Miriam L. Gifford
Miriam L. Gifford
Patrick Schäfer
Patrick Schäfer
author_sort Chrysi Sergaki
collection DOAJ
description We face major agricultural challenges that remain a threat for global food security. Soil microbes harbor enormous potentials to provide sustainable and economically favorable solutions that could introduce novel approaches to improve agricultural practices and, hence, crop productivity. In this review we give an overview regarding the current state-of-the-art of microbiome research by discussing new technologies and approaches. We also provide insights into fundamental microbiome research that aim to provide a deeper understanding of the dynamics within microbial communities, as well as their interactions with different plant hosts and the environment. We aim to connect all these approaches with potential applications and reflect how we can use microbial communities in modern agricultural systems to realize a more customized and sustainable use of valuable resources (e.g., soil).
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spelling doaj.art-289d8e0a47d04f099121341dd6cb15c42022-12-22T03:20:10ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2018-08-01910.3389/fpls.2018.01205387738Challenges and Approaches in Microbiome Research: From Fundamental to AppliedChrysi Sergaki0Beatriz Lagunas1Ian Lidbury2Miriam L. Gifford3Miriam L. Gifford4Patrick Schäfer5Patrick Schäfer6School of Life Sciences, University of Warwick, Coventry, United KingdomSchool of Life Sciences, University of Warwick, Coventry, United KingdomSchool of Life Sciences, University of Warwick, Coventry, United KingdomSchool of Life Sciences, University of Warwick, Coventry, United KingdomWarwick Integrative Synthetic Biology Centre, University of Warwick, Coventry, United KingdomSchool of Life Sciences, University of Warwick, Coventry, United KingdomWarwick Integrative Synthetic Biology Centre, University of Warwick, Coventry, United KingdomWe face major agricultural challenges that remain a threat for global food security. Soil microbes harbor enormous potentials to provide sustainable and economically favorable solutions that could introduce novel approaches to improve agricultural practices and, hence, crop productivity. In this review we give an overview regarding the current state-of-the-art of microbiome research by discussing new technologies and approaches. We also provide insights into fundamental microbiome research that aim to provide a deeper understanding of the dynamics within microbial communities, as well as their interactions with different plant hosts and the environment. We aim to connect all these approaches with potential applications and reflect how we can use microbial communities in modern agricultural systems to realize a more customized and sustainable use of valuable resources (e.g., soil).https://www.frontiersin.org/article/10.3389/fpls.2018.01205/fullmicrobial communityroot interactionscropping systemsgnotobioticomicsmicrobial function
spellingShingle Chrysi Sergaki
Beatriz Lagunas
Ian Lidbury
Miriam L. Gifford
Miriam L. Gifford
Patrick Schäfer
Patrick Schäfer
Challenges and Approaches in Microbiome Research: From Fundamental to Applied
Frontiers in Plant Science
microbial community
root interactions
cropping systems
gnotobiotic
omics
microbial function
title Challenges and Approaches in Microbiome Research: From Fundamental to Applied
title_full Challenges and Approaches in Microbiome Research: From Fundamental to Applied
title_fullStr Challenges and Approaches in Microbiome Research: From Fundamental to Applied
title_full_unstemmed Challenges and Approaches in Microbiome Research: From Fundamental to Applied
title_short Challenges and Approaches in Microbiome Research: From Fundamental to Applied
title_sort challenges and approaches in microbiome research from fundamental to applied
topic microbial community
root interactions
cropping systems
gnotobiotic
omics
microbial function
url https://www.frontiersin.org/article/10.3389/fpls.2018.01205/full
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AT miriamlgifford challengesandapproachesinmicrobiomeresearchfromfundamentaltoapplied
AT patrickschafer challengesandapproachesinmicrobiomeresearchfromfundamentaltoapplied
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