A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0
The sugar beet root maggot (SBRM), Tetanops myopaeformis (von Röder), is a devastating insect pathogen of sugar beet (SB), Beta vulgaris, ssp vulgaris (B. vulgaris), an important food crop, while also being one of only two plants globally from which sugar is widely produced, and accounting for 35% o...
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| Format: | Article |
| Language: | English |
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Elsevier
2024-06-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340924002671 |
| _version_ | 1797256324789043200 |
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| author | Nadim W. Alkharouf Chenggen Chu Vincent P. Klink |
| author_facet | Nadim W. Alkharouf Chenggen Chu Vincent P. Klink |
| author_sort | Nadim W. Alkharouf |
| collection | DOAJ |
| description | The sugar beet root maggot (SBRM), Tetanops myopaeformis (von Röder), is a devastating insect pathogen of sugar beet (SB), Beta vulgaris, ssp vulgaris (B. vulgaris), an important food crop, while also being one of only two plants globally from which sugar is widely produced, and accounting for 35% of global raw sugar with an annual farm value of $3 billion in the United States alone. SBRM is the most devastating pathogen of sugar beet in North America. The limited natural resistance of B. vulgaris necessitates an understanding of the SBRM genome to facilitate generating knowledge of its basic biology, including the interaction between the pathogen and its host(s). Presented is the de novo assembled draft genome sequence of T. myopaeformis isolated from field-grown B. vulgaris in North Dakota, USA. The SBRM genome sequence TmSBRM_v1.0 will also be valuable for molecular genetic marker development to facilitate host resistance gene identification and knowledge, including SB polygalacturonase inhibiting protein (PGIP), and development of new control strategies for this pathogen, relationship to model genetic organisms like Drosophila melanogaster and aid in agronomic improvement of sugar beet for stakeholders while also providing information on the relationship between the SBRM and climate change. |
| first_indexed | 2024-04-24T22:19:56Z |
| format | Article |
| id | doaj.art-290fb9669b2d464ba485adf1840c871d |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-24T22:19:56Z |
| publishDate | 2024-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-290fb9669b2d464ba485adf1840c871d2024-03-20T06:10:18ZengElsevierData in Brief2352-34092024-06-0154110298A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0Nadim W. Alkharouf0Chenggen Chu1Vincent P. Klink2Department of Computer and Information Sciences, Towson University, Towson, MD 21252, USAUSDA-ARS-NA- Northern Great Plains Research Laboratory, 1307 N 18TH ST Northern Crop Science Laboratory, Fargo, ND 58102, USAUSDA-ARS-NEA-BARC, Molecular Plant Pathology Laboratory, Building 004, Room 122, BARC-West, 10300 Baltimore Ave., Beltsville, MD 20705, USA; Corresponding author.The sugar beet root maggot (SBRM), Tetanops myopaeformis (von Röder), is a devastating insect pathogen of sugar beet (SB), Beta vulgaris, ssp vulgaris (B. vulgaris), an important food crop, while also being one of only two plants globally from which sugar is widely produced, and accounting for 35% of global raw sugar with an annual farm value of $3 billion in the United States alone. SBRM is the most devastating pathogen of sugar beet in North America. The limited natural resistance of B. vulgaris necessitates an understanding of the SBRM genome to facilitate generating knowledge of its basic biology, including the interaction between the pathogen and its host(s). Presented is the de novo assembled draft genome sequence of T. myopaeformis isolated from field-grown B. vulgaris in North Dakota, USA. The SBRM genome sequence TmSBRM_v1.0 will also be valuable for molecular genetic marker development to facilitate host resistance gene identification and knowledge, including SB polygalacturonase inhibiting protein (PGIP), and development of new control strategies for this pathogen, relationship to model genetic organisms like Drosophila melanogaster and aid in agronomic improvement of sugar beet for stakeholders while also providing information on the relationship between the SBRM and climate change.http://www.sciencedirect.com/science/article/pii/S2352340924002671GenomePlant pathogenInsectevolutionDrosophilaClimate change |
| spellingShingle | Nadim W. Alkharouf Chenggen Chu Vincent P. Klink A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0 Data in Brief Genome Plant pathogen Insect evolution Drosophila Climate change |
| title | A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0 |
| title_full | A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0 |
| title_fullStr | A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0 |
| title_full_unstemmed | A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0 |
| title_short | A de novo assembly of genomic dataset sequences of the sugar beet root maggot Tetanops myopaeformis, TmSBRM_v1.0 |
| title_sort | de novo assembly of genomic dataset sequences of the sugar beet root maggot tetanops myopaeformis tmsbrm v1 0 |
| topic | Genome Plant pathogen Insect evolution Drosophila Climate change |
| url | http://www.sciencedirect.com/science/article/pii/S2352340924002671 |
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