Evolution of gastropod mitochondrial genome arrangements
<p>Abstract</p> <p>Background</p> <p>Gastropod mitochondrial genomes exhibit an unusually great variety of gene orders compared to other metazoan mitochondrial genome such as e.g those of vertebrates. Hence, gastropod mitochondrial genomes constitute a good model system...
| Main Authors: | , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
BMC
2008-02-01
|
| Series: | BMC Evolutionary Biology |
| Online Access: | http://www.biomedcentral.com/1471-2148/8/61 |
| _version_ | 1818978241866629120 |
|---|---|
| author | Zardoya Rafael Templado José Grande Cristina |
| author_facet | Zardoya Rafael Templado José Grande Cristina |
| author_sort | Zardoya Rafael |
| collection | DOAJ |
| description | <p>Abstract</p> <p>Background</p> <p>Gastropod mitochondrial genomes exhibit an unusually great variety of gene orders compared to other metazoan mitochondrial genome such as e.g those of vertebrates. Hence, gastropod mitochondrial genomes constitute a good model system to study patterns, rates, and mechanisms of mitochondrial genome rearrangement. However, this kind of evolutionary comparative analysis requires a robust phylogenetic framework of the group under study, which has been elusive so far for gastropods in spite of the efforts carried out during the last two decades. Here, we report the complete nucleotide sequence of five mitochondrial genomes of gastropods (<it>Pyramidella dolabrata</it>, <it>Ascobulla fragilis</it>, <it>Siphonaria pectinata</it>, <it>Onchidella celtica</it>, and <it>Myosotella myosotis</it>), and we analyze them together with another ten complete mitochondrial genomes of gastropods currently available in molecular databases in order to reconstruct the phylogenetic relationships among the main lineages of gastropods.</p> <p>Results</p> <p>Comparative analyses with other mollusk mitochondrial genomes allowed us to describe molecular features and general trends in the evolution of mitochondrial genome organization in gastropods. Phylogenetic reconstruction with commonly used methods of phylogenetic inference (ME, MP, ML, BI) arrived at a single topology, which was used to reconstruct the evolution of mitochondrial gene rearrangements in the group.</p> <p>Conclusion</p> <p>Four main lineages were identified within gastropods: Caenogastropoda, Vetigastropoda, Patellogastropoda, and Heterobranchia. Caenogastropoda and Vetigastropoda are sister taxa, as well as, Patellogastropoda and Heterobranchia. This result rejects the validity of the derived clade Apogastropoda (Caenogastropoda + Heterobranchia). The position of Patellogastropoda remains unclear likely due to long-branch attraction biases. Within Heterobranchia, the most heterogeneous group of gastropods, neither Euthyneura (because of the inclusion of <it>P. dolabrata</it>) nor Pulmonata (polyphyletic) nor Opisthobranchia (because of the inclusion <it>S. pectinata</it>) were recovered as monophyletic groups. The gene order of the Vetigastropoda might represent the ancestral mitochondrial gene order for Gastropoda and we propose that at least three major rearrangements have taken place in the evolution of gastropods: one in the ancestor of Caenogastropoda, another in the ancestor of Patellogastropoda, and one more in the ancestor of Heterobranchia.</p> |
| first_indexed | 2024-12-20T16:40:31Z |
| format | Article |
| id | doaj.art-292dcac3ab684a15bf8f7edffa5e981e |
| institution | Directory Open Access Journal |
| issn | 1471-2148 |
| language | English |
| last_indexed | 2024-12-20T16:40:31Z |
| publishDate | 2008-02-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Evolutionary Biology |
| spelling | doaj.art-292dcac3ab684a15bf8f7edffa5e981e2022-12-21T19:33:02ZengBMCBMC Evolutionary Biology1471-21482008-02-01816110.1186/1471-2148-8-61Evolution of gastropod mitochondrial genome arrangementsZardoya RafaelTemplado JoséGrande Cristina<p>Abstract</p> <p>Background</p> <p>Gastropod mitochondrial genomes exhibit an unusually great variety of gene orders compared to other metazoan mitochondrial genome such as e.g those of vertebrates. Hence, gastropod mitochondrial genomes constitute a good model system to study patterns, rates, and mechanisms of mitochondrial genome rearrangement. However, this kind of evolutionary comparative analysis requires a robust phylogenetic framework of the group under study, which has been elusive so far for gastropods in spite of the efforts carried out during the last two decades. Here, we report the complete nucleotide sequence of five mitochondrial genomes of gastropods (<it>Pyramidella dolabrata</it>, <it>Ascobulla fragilis</it>, <it>Siphonaria pectinata</it>, <it>Onchidella celtica</it>, and <it>Myosotella myosotis</it>), and we analyze them together with another ten complete mitochondrial genomes of gastropods currently available in molecular databases in order to reconstruct the phylogenetic relationships among the main lineages of gastropods.</p> <p>Results</p> <p>Comparative analyses with other mollusk mitochondrial genomes allowed us to describe molecular features and general trends in the evolution of mitochondrial genome organization in gastropods. Phylogenetic reconstruction with commonly used methods of phylogenetic inference (ME, MP, ML, BI) arrived at a single topology, which was used to reconstruct the evolution of mitochondrial gene rearrangements in the group.</p> <p>Conclusion</p> <p>Four main lineages were identified within gastropods: Caenogastropoda, Vetigastropoda, Patellogastropoda, and Heterobranchia. Caenogastropoda and Vetigastropoda are sister taxa, as well as, Patellogastropoda and Heterobranchia. This result rejects the validity of the derived clade Apogastropoda (Caenogastropoda + Heterobranchia). The position of Patellogastropoda remains unclear likely due to long-branch attraction biases. Within Heterobranchia, the most heterogeneous group of gastropods, neither Euthyneura (because of the inclusion of <it>P. dolabrata</it>) nor Pulmonata (polyphyletic) nor Opisthobranchia (because of the inclusion <it>S. pectinata</it>) were recovered as monophyletic groups. The gene order of the Vetigastropoda might represent the ancestral mitochondrial gene order for Gastropoda and we propose that at least three major rearrangements have taken place in the evolution of gastropods: one in the ancestor of Caenogastropoda, another in the ancestor of Patellogastropoda, and one more in the ancestor of Heterobranchia.</p>http://www.biomedcentral.com/1471-2148/8/61 |
| spellingShingle | Zardoya Rafael Templado José Grande Cristina Evolution of gastropod mitochondrial genome arrangements BMC Evolutionary Biology |
| title | Evolution of gastropod mitochondrial genome arrangements |
| title_full | Evolution of gastropod mitochondrial genome arrangements |
| title_fullStr | Evolution of gastropod mitochondrial genome arrangements |
| title_full_unstemmed | Evolution of gastropod mitochondrial genome arrangements |
| title_short | Evolution of gastropod mitochondrial genome arrangements |
| title_sort | evolution of gastropod mitochondrial genome arrangements |
| url | http://www.biomedcentral.com/1471-2148/8/61 |
| work_keys_str_mv | AT zardoyarafael evolutionofgastropodmitochondrialgenomearrangements AT templadojose evolutionofgastropodmitochondrialgenomearrangements AT grandecristina evolutionofgastropodmitochondrialgenomearrangements |