Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres
This dataset reflects the parallel execution profiles of five Quantum ESPRESSO simulation (QE) versions in finding the total energy of the Cerium Oxide lattice using the self-consistent field (SCF) method. The data analysis used a strong scale setting to identify the optimal parameters and computing...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2023-10-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340923006996 |
| _version_ | 1797660428580421632 |
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| author | Worawan Marurngsith Supakiet Waiphinit Wiraporn Rosmode Ruchipas Bavontaweepanya Jiaxin Fan |
| author_facet | Worawan Marurngsith Supakiet Waiphinit Wiraporn Rosmode Ruchipas Bavontaweepanya Jiaxin Fan |
| author_sort | Worawan Marurngsith |
| collection | DOAJ |
| description | This dataset reflects the parallel execution profiles of five Quantum ESPRESSO simulation (QE) versions in finding the total energy of the Cerium Oxide lattice using the self-consistent field (SCF) method. The data analysis used a strong scale setting to identify the optimal parameters and computing resources needed to complete a single SCF loop for one specific material efficiently. This analysis notably contributed to achieving the Best Performance Award at the 5th APAC HPC-AI Competition. The data comprises three sets. The first set features the parallel execution traces captured via the Extrae performance profiling tool, offering a broad view of the QE's model execution behaviour and how it used computational resources. The second set records how long QE's model ran on a single node at three HPC centres: ThaiSC TARA in Thailand, NSCC ASPIRE-1 in Singapore, and NCI Gadi in Australia. This set focuses on the impact of adjusting three parameters for K-point parallelisation. The final set presents benchmarking data generated by scaling out the QE's model across 32 nodes (1,536 CPU cores) on the NCI Gadi supercomputer. Despite its focus on a single material, the dataset serves as a roadmap for researchers to estimate required computational resources and understand scalability bottlenecks, offering general guidelines adaptable across different HPC systems. |
| first_indexed | 2024-03-11T18:29:45Z |
| format | Article |
| id | doaj.art-294a589e0df646ea89bdc946e0a64690 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-03-11T18:29:45Z |
| publishDate | 2023-10-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-294a589e0df646ea89bdc946e0a646902023-10-13T11:05:14ZengElsevierData in Brief2352-34092023-10-0150109614Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centresWorawan Marurngsith0Supakiet Waiphinit1Wiraporn Rosmode2Ruchipas Bavontaweepanya3Jiaxin Fan4Department of Computer Science, Faculty of Science and Technology, Thammasat University (Lampang Campus) 248 M.2 Hang Chat, Lampang 52190 Thailand; Corresponding author.Department of Computer Science, Faculty of Science and Technology, Thammasat University (Lampang Campus) 248 M.2 Hang Chat, Lampang 52190 ThailandDepartment of Computer Science, Faculty of Science and Technology, Thammasat University (Lampang Campus) 248 M.2 Hang Chat, Lampang 52190 ThailandThammasat University Research Unit in Quantum Technology, Thammasat University (Rangsit Campus) 99 Khlong Luang, Pathum Thani 12120 ThailandNational Computational Infrastructure, AustraliaThis dataset reflects the parallel execution profiles of five Quantum ESPRESSO simulation (QE) versions in finding the total energy of the Cerium Oxide lattice using the self-consistent field (SCF) method. The data analysis used a strong scale setting to identify the optimal parameters and computing resources needed to complete a single SCF loop for one specific material efficiently. This analysis notably contributed to achieving the Best Performance Award at the 5th APAC HPC-AI Competition. The data comprises three sets. The first set features the parallel execution traces captured via the Extrae performance profiling tool, offering a broad view of the QE's model execution behaviour and how it used computational resources. The second set records how long QE's model ran on a single node at three HPC centres: ThaiSC TARA in Thailand, NSCC ASPIRE-1 in Singapore, and NCI Gadi in Australia. This set focuses on the impact of adjusting three parameters for K-point parallelisation. The final set presents benchmarking data generated by scaling out the QE's model across 32 nodes (1,536 CPU cores) on the NCI Gadi supercomputer. Despite its focus on a single material, the dataset serves as a roadmap for researchers to estimate required computational resources and understand scalability bottlenecks, offering general guidelines adaptable across different HPC systems.http://www.sciencedirect.com/science/article/pii/S2352340923006996Performance evaluationHigh performance computingQuantum physics simulationProfilingParallel and distributed computingCatalytic reaction |
| spellingShingle | Worawan Marurngsith Supakiet Waiphinit Wiraporn Rosmode Ruchipas Bavontaweepanya Jiaxin Fan Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres Data in Brief Performance evaluation High performance computing Quantum physics simulation Profiling Parallel and distributed computing Catalytic reaction |
| title | Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres |
| title_full | Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres |
| title_fullStr | Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres |
| title_full_unstemmed | Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres |
| title_short | Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres |
| title_sort | performance and profiling data of plane wave calculations in quantum espresso simulation on three supercomputing centres |
| topic | Performance evaluation High performance computing Quantum physics simulation Profiling Parallel and distributed computing Catalytic reaction |
| url | http://www.sciencedirect.com/science/article/pii/S2352340923006996 |
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