Detection and phylogenetic analysis of new Iranian isolates of Cucumber mosaic virus on Achillea species
Cucumber mosaic virus (CMV) is one of the most important viruses that globally cause disease outbreaks in horticultural, vegetable, and agronomic crops. To investigate the incidence of viruses infecting Achillea species (yarrows), 350 samples with mosaic, yellowing, and deformation symptoms were col...
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| Format: | Article |
| Language: | English |
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University of Tarbiat Modares
2021-02-01
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| Series: | Journal of Crop Protection |
| Subjects: | |
| Online Access: | http://jcp.modares.ac.ir/article-3-43413-en.html |
| _version_ | 1818238572175556608 |
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| author | Faezehossadat Abtahi Mehrnaz Hatami Hossein Salehi-Arjmand Majid Mahdiyeh Razieh Yazdani |
| author_facet | Faezehossadat Abtahi Mehrnaz Hatami Hossein Salehi-Arjmand Majid Mahdiyeh Razieh Yazdani |
| author_sort | Faezehossadat Abtahi |
| collection | DOAJ |
| description | Cucumber mosaic virus (CMV) is one of the most important viruses that globally cause disease outbreaks in horticultural, vegetable, and agronomic crops. To investigate the incidence of viruses infecting Achillea species (yarrows), 350 samples with mosaic, yellowing, and deformation symptoms were collected from different Markazi province locations during the spring seasons of 2017, 2018. CMV infection was detected by using DAS-ELISA. Five samples were selected for phylogenetic studies based on sampling areas and yarrow’s species. A 657 bp fragment of coat protein was amplified using specific primers of CMVCPr and CMVCPf in RT-PCR, cloned and sequenced. Obtained sequences of this study were compared with the retrieved sequences from GenBank. The identities of the CP at the nucleotide and amino acid levels were 95% and 100%, respectively, and are close to other Iranian isolates of CMV. Constructed phylogenetic tree showed that five Iranian isolates from yarrows were placed in the subgroup IB. This finding is the first genetic analysis of CMV from yarrow in Iran. |
| first_indexed | 2024-12-12T12:43:47Z |
| format | Article |
| id | doaj.art-294f9d13d7414d4e88eea7b63461c9a4 |
| institution | Directory Open Access Journal |
| issn | 2251-9041 2251-905X |
| language | English |
| last_indexed | 2024-12-12T12:43:47Z |
| publishDate | 2021-02-01 |
| publisher | University of Tarbiat Modares |
| record_format | Article |
| series | Journal of Crop Protection |
| spelling | doaj.art-294f9d13d7414d4e88eea7b63461c9a42022-12-22T00:24:10ZengUniversity of Tarbiat ModaresJournal of Crop Protection2251-90412251-905X2021-02-01102309317Detection and phylogenetic analysis of new Iranian isolates of Cucumber mosaic virus on Achillea speciesFaezehossadat Abtahi0Mehrnaz Hatami1Hossein Salehi-Arjmand2Majid Mahdiyeh3Razieh Yazdani4 Department of Medicinal Plants, Faculty of Agriculture and Natural Resources, Arak University, Arak 38156-8-8349, Iran. Department of Medicinal Plants, Faculty of Agriculture and Natural Resources, Arak University, Arak 38156-8-8349, Iran. Department of Medicinal Plants, Faculty of Agriculture and Natural Resources, Arak University, Arak 38156-8-8349, Iran. Department of Biology, Faculty of Science, Arak University, Arak 38156-8-8349, Iran. Department of Plant Pathology, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran. Cucumber mosaic virus (CMV) is one of the most important viruses that globally cause disease outbreaks in horticultural, vegetable, and agronomic crops. To investigate the incidence of viruses infecting Achillea species (yarrows), 350 samples with mosaic, yellowing, and deformation symptoms were collected from different Markazi province locations during the spring seasons of 2017, 2018. CMV infection was detected by using DAS-ELISA. Five samples were selected for phylogenetic studies based on sampling areas and yarrow’s species. A 657 bp fragment of coat protein was amplified using specific primers of CMVCPr and CMVCPf in RT-PCR, cloned and sequenced. Obtained sequences of this study were compared with the retrieved sequences from GenBank. The identities of the CP at the nucleotide and amino acid levels were 95% and 100%, respectively, and are close to other Iranian isolates of CMV. Constructed phylogenetic tree showed that five Iranian isolates from yarrows were placed in the subgroup IB. This finding is the first genetic analysis of CMV from yarrow in Iran.http://jcp.modares.ac.ir/article-3-43413-en.htmlcoat proteinphylogenetic treesubgroup ibyarrow |
| spellingShingle | Faezehossadat Abtahi Mehrnaz Hatami Hossein Salehi-Arjmand Majid Mahdiyeh Razieh Yazdani Detection and phylogenetic analysis of new Iranian isolates of Cucumber mosaic virus on Achillea species Journal of Crop Protection coat protein phylogenetic tree subgroup ib yarrow |
| title | Detection and phylogenetic analysis of new Iranian isolates of Cucumber mosaic virus on Achillea species |
| title_full | Detection and phylogenetic analysis of new Iranian isolates of Cucumber mosaic virus on Achillea species |
| title_fullStr | Detection and phylogenetic analysis of new Iranian isolates of Cucumber mosaic virus on Achillea species |
| title_full_unstemmed | Detection and phylogenetic analysis of new Iranian isolates of Cucumber mosaic virus on Achillea species |
| title_short | Detection and phylogenetic analysis of new Iranian isolates of Cucumber mosaic virus on Achillea species |
| title_sort | detection and phylogenetic analysis of new iranian isolates of cucumber mosaic virus on achillea species |
| topic | coat protein phylogenetic tree subgroup ib yarrow |
| url | http://jcp.modares.ac.ir/article-3-43413-en.html |
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