Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)
Carallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-10-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2135398 |
| _version_ | 1797638557631774720 |
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| author | Renjie Wang Nanyan Liao Xiongsheng Liu Yi Qin Yufei Xiao Yong Wang Ronglin Huang |
| author_facet | Renjie Wang Nanyan Liao Xiongsheng Liu Yi Qin Yufei Xiao Yong Wang Ronglin Huang |
| author_sort | Renjie Wang |
| collection | DOAJ |
| description | Carallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single copy (LSC) of 89,556 bp and a small single copy (SSC) of 18,814 bp, separated a pair of inverted repeats (IRb and IRa) of 26,841 bp. The overall GC content is 36.4%. A total of 130 genes are annotated, including 83 protein-coding genes, 37 tRNAs, eight rRNAs and two pseudogenes (ψycf1 and ψrps19). The phylogenetic analysis indicated that C. diplopetala and C. brachiate formed a monophyletic clade with strong support and then sister to Pellacalyx yunnanensis. The plastome of C. diplopetala will provide informative genomic resources for further conservation applications. |
| first_indexed | 2024-03-11T13:04:19Z |
| format | Article |
| id | doaj.art-295951fbeb13491cb125585768ea5eda |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:04:19Z |
| publishDate | 2022-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-295951fbeb13491cb125585768ea5eda2023-11-03T14:44:05ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-10-017101870187210.1080/23802359.2022.21353982135398Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae)Renjie Wang0Nanyan Liao1Xiongsheng Liu2Yi Qin3Yufei Xiao4Yong Wang5Ronglin Huang6Guangxi Zhuang Autonomous Region Forestry Research InstituteGuangxi Fangcheng Golden, Camellias National Nature ReserveGuangxi Zhuang Autonomous Region Forestry Research InstituteGuangxi Fangcheng Golden, Camellias National Nature ReserveGuangxi Zhuang Autonomous Region Forestry Research InstituteGuangxi Zhuang Autonomous Region Forestry Research InstituteGuangxi Zhuang Autonomous Region Forestry Research InstituteCarallia diplopetala (Rhizophoraceae) is an important economic tree species narrowly distributed endemic to East Asia. In this study, We generate the complete chloroplast genome of C. diplopetala using next-generation sequencing technology, which is 162,052 bp in size and consists of a large single copy (LSC) of 89,556 bp and a small single copy (SSC) of 18,814 bp, separated a pair of inverted repeats (IRb and IRa) of 26,841 bp. The overall GC content is 36.4%. A total of 130 genes are annotated, including 83 protein-coding genes, 37 tRNAs, eight rRNAs and two pseudogenes (ψycf1 and ψrps19). The phylogenetic analysis indicated that C. diplopetala and C. brachiate formed a monophyletic clade with strong support and then sister to Pellacalyx yunnanensis. The plastome of C. diplopetala will provide informative genomic resources for further conservation applications.http://dx.doi.org/10.1080/23802359.2022.2135398carallia diplopetalarhizophoraceaechloroplast genomephylogeny |
| spellingShingle | Renjie Wang Nanyan Liao Xiongsheng Liu Yi Qin Yufei Xiao Yong Wang Ronglin Huang Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) Mitochondrial DNA. Part B. Resources carallia diplopetala rhizophoraceae chloroplast genome phylogeny |
| title | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
| title_full | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
| title_fullStr | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
| title_short | Characterization of the complete chloroplast genome of Carallia diplopetala (Rhizophoraceae) |
| title_sort | characterization of the complete chloroplast genome of carallia diplopetala rhizophoraceae |
| topic | carallia diplopetala rhizophoraceae chloroplast genome phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2022.2135398 |
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