The Finnish New Variant of <em>Chlamydia trachomatis</em> with a Single Nucleotide Polymorphism in the 23S rRNA Target Escapes Detection by the Aptima Combo 2 Test

In 2019, more than 200 cases of <i>Chlamydia trachomatis</i> negative/equivocal by the Aptima Combo 2 assay (AC2, target: 23S rRNA) with slightly elevated relative light units (RLUs), but positive by the Aptima <i>Chlamydia trachomatis</i> assay (ACT, target: 16S rRNA) have b...

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Main Authors: Kati Hokynar, Kaisu Rantakokko-Jalava, Antti Hakanen, Marika Havana, Laura Mannonen, Pia Jokela, Satu Kurkela, Maija Lappalainen, Magnus Unemo, Mirja Puolakkainen
Format: Article
Language:English
Published: MDPI AG 2019-07-01
Series:Microorganisms
Subjects:
Online Access:https://www.mdpi.com/2076-2607/7/8/227
Description
Summary:In 2019, more than 200 cases of <i>Chlamydia trachomatis</i> negative/equivocal by the Aptima Combo 2 assay (AC2, target: 23S rRNA) with slightly elevated relative light units (RLUs), but positive by the Aptima <i>Chlamydia trachomatis</i> assay (ACT, target: 16S rRNA) have been detected in Finland To identify the cause of the AC2 CT false-negative specimens, we sequenced parts of the CT 23S rRNA gene in 40 specimens that were AC2 negative/equivocal but ACT positive. A single nucleotide polymorphism (SNP; C1515T in the <i>C. trachomatis</i> 23S rRNA gene) was revealed in 39 AC2/ACT discordant specimens. No decrease in the number of mandatorily notified <i>C. trachomatis</i> cases was observed nationally in Finland in 2010–2019. When RLUs obtained for AC2 negative specimens were retrospectively evaluated in 2011–2019, a continuous increase in the proportion of samples with RLUs 10–19 was observed since 2014, and a slight increase in the proportion of samples with RLUs 20–84 in 2017–2019, indicating that the Finnish new variant of <i>C. trachomatis</i> might have been spreading nationally for several years. This emphasizes that careful surveillance of epidemiology, positivity rate and test performance are mandatory to detect any changes affecting detection of infections.
ISSN:2076-2607