RiceProteomeDB (RPDB): a user-friendly database for proteomics data storage, retrieval, and analysis

RiceProteomeDB (RPDB): a user-friendly database for proteomics data storage, retrieval, and analysis

Abstract Rice, feeding a significant portion of the world, poses unique proteomic challenges critical to agricultural research and global food security. The complexity of the rice proteome, influenced by various genetic and environmental factors, demands specialized analytical approaches for effecti...

Full description

Bibliographic Details
Main Authors:	Dong U Woo, Yejin Lee, Cheol Woo Min, Sun Tae Kim, Yang Jae Kang
Format:	Article
Language:	English
Published:	Nature Portfolio 2024-02-01
Series:	Scientific Reports
Online Access:	https://doi.org/10.1038/s41598-024-54151-4

Similar Items

OryzaPG-DB: Rice Proteome Database based on Shotgun Proteogenomics
by: Tomita Masaru, et al.
Published: (2011-04-01)

2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments
by: Hippler Michael, et al.
Published: (2008-07-01)

PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila
by: Nolte Viola, et al.
Published: (2011-03-01)

EPIC-DB: a proteomics database for studying Apicomplexan organisms
by: Angeletti Ruth, et al.
Published: (2009-01-01)

TMT-based quantitative proteome data of MSP1 overexpressed rice
by: Cheol Woo Min, et al.
Published: (2023-02-01)

HypDB: A functionally annotated web-based database of the proline hydroxylation proteome.
by: Yao Gong, et al.
Published: (2022-08-01)

Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates.
by: Sonu Kumar, et al.
Published: (2014-01-01)

kmerDB: A database encompassing the set of genomic and proteomic sequence information for each species
by: Ioannis Mouratidis, et al.
Published: (2024-12-01)

Dataset on post-translational modifications proteome analysis of MSP1-overexpressing rice leaf proteins
by: Gi Hyun Lee, et al.
Published: (2023-10-01)

Investigation of the Protective Effects of Phlorizin on Diabetic Cardiomyopathy in db/db Mice by Quantitative Proteomics
by: Qian Cai, et al.
Published: (2013-01-01)

amica: an interactive and user-friendly web-platform for the analysis of proteomics data
by: Sebastian Didusch, et al.
Published: (2022-12-01)

MongoDB Database as Storage for GPON Frames
by: Martin Holik, et al.
Published: (2020-10-01)

Label-free proteome data of susceptible and resistant rice cultivars in response to Xanthomonas oryzae pv. oryzae inoculation
by: Ravi Gupta, et al.
Published: (2022-04-01)

Expect the Unexpected Enrichment of Hidden Proteome of Seeds and Tubers by Depletion of Storage Proteins
by: Ravi eGupta, et al.
Published: (2016-06-01)

Database independent proteomics analysis of the ostrich and human proteome.
by: Altelaar, A, et al.
Published: (2012)

Quantitative Proteomic Analysis Deciphers the Molecular Mechanism for Endosperm Nuclear Division in Early Rice Seed Development
by: Jinmi Yoon, et al.
Published: (2023-10-01)

Aerobic Exercise Modulates Proteomic Profiles in Gastrocnemius Muscle of <i>db/db</i> Mice, Ameliorating Sarcopenia
by: Yen-Chun Huang, et al.
Published: (2024-03-01)

POMAShiny: A user-friendly web-based workflow for metabolomics and proteomics data analysis.
by: Pol Castellano-Escuder, et al.
Published: (2021-07-01)

The Chordate Proteome History Database
by: Anthony Levasseur, et al.
Published: (2012-01-01)

The Chordate Proteome History Database
by: Anthony Levasseur, et al.
Published: (2012-08-01)

Development and Validation of the Yonsei Face Database (YFace DB)
by: Kyong-Mee Chung, et al.
Published: (2019-12-01)

A3DyDB: exploring structural aggregation propensities in the yeast proteome
by: Javier Garcia-Pardo, et al.
Published: (2023-09-01)

An Integrated Approach for the Efficient Extraction and Solubilization of Rice Microsomal Membrane Proteins for High-Throughput Proteomics
by: Truong Van Nguyen, et al.
Published: (2021-09-01)

Alternative splicing diversifies the transcriptome and proteome of the rice blast fungus during host infection
by: Jongbum Jeon, et al.
Published: (2022-12-01)

Proteomics of Rice Seed Germination
by: Dongli eHe, et al.
Published: (2013-07-01)

Soybean Proteome Database 2012: Update on the comprehensive data repository for soybean proteomics
by: Hajime eOhyanagi, et al.
Published: (2012-05-01)

Label-free quantitative proteome data associated with MSP1 and flg22 induced signaling in rice leaves
by: Qingfeng Meng, et al.
Published: (2018-10-01)

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
by: Cheung Kei-Hoi, et al.
Published: (2007-05-01)

Construction of an integrated human osteosarcoma database, HOsDb, based on literature mining, microarray analysis, and database retrieval
by: Yifu Sun, et al.
Published: (2020-05-01)

The Proteomics Identifications database: 2010 update
by: Vizcaino, Juan Antonio, et al.
Published: (2012)

Avian Immunome DB: an example of a user-friendly interface for extracting genetic information
by: Ralf C. Mueller, et al.
Published: (2020-11-01)

<i>Pinctada martensii</i> Hydrolysate Modulates the Brain Neuropeptidome and Proteome in Diabetic (db/db) Mice via the Gut–Brain Axis
by: Jiayun Li, et al.
Published: (2024-05-01)

Protein Expression Profile of Twenty-Week-Old Diabetic db/db and Non-Diabetic Mice Livers: A Proteomic and Bioinformatic Analysis
by: Juan Manuel Guzmán-Flores, et al.
Published: (2018-06-01)

A Proteomics Insight into Advancements in the Rice–Microbe Interaction
by: Lirong Wei, et al.
Published: (2023-02-01)

RicePedigree: Rice Pedigree Database for Documentation and Assistance in Rice Breeding
by: Dong-U Woo, et al.
Published: (2022-12-01)

Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
by: Ye Mingliang, et al.
Published: (2007-08-01)

NewSQL Databases Assessment: CockroachDB, MariaDB Xpand, and VoltDB
by: Eduardo Pina, et al.
Published: (2022-12-01)

Proteomics of Rice—Magnaporthe oryzae Interaction: What Have We Learned So Far?
by: Qingfeng Meng, et al.
Published: (2019-10-01)

The rice proteogenomics database OryzaPG-DB: development, expansion and new features
by: Mohamed eHelmy, et al.
Published: (2012-04-01)

Improving subject retrieval : user-friendly interfaces and effectiveness
by: Espelt, Constança
Published: (1998-06-01)