Evaluation of Thermal Stability of DNA Oligonucleotide Structures Embedded in Hydrogels

Evaluation of Thermal Stability of DNA Oligonucleotide Structures Embedded in Hydrogels

Understanding the self-assembly and hybridization properties of DNA oligonucleotides in confined spaces can help to improve their applications in biotechnology and nanotechnology. This study investigates the effects of spatial confinement in the pores of hydrogels on the thermal stability of DNA oli...

Full description

Bibliographic Details
Main Authors:	Daisuke Yamaguchi, Masatoshi Yoshida, Shu-ichi Nakano
Format:	Article
Language:	English
Published:	MDPI AG 2022-12-01
Series:	DNA
Subjects:	oligonucleotide hairpin G-quadruplex melting temperature agarose gel polyacrylamide gel
Online Access:	https://www.mdpi.com/2673-8856/2/4/21

Similar Items

A Transparent Hydrogel-Ionic Conductor with High Water Retention and Self-Healing Ability
by: Yangwoo Lee, et al.
Published: (2024-01-01)

Beyond G-Quadruplexes—The Effect of Junction with Additional Structural Motifs on Aptamers Properties
by: Weronika Kotkowiak, et al.
Published: (2021-09-01)

Oligonucleotide Binding to Non-B-DNA in MYC
by: Tea Umek, et al.
Published: (2019-03-01)

G-Quadruplex Forming Oligonucleotides as Anti-HIV Agents
by: Domenica Musumeci, et al.
Published: (2015-09-01)

Characterization of self-assembled DNA concatemers from synthetic oligonucleotides
by: Lu Sun, et al.
Published: (2014-08-01)

Agarose Gel Electrophoresis-Based RAPD-PCR—An Optimization of the Conditions to Rapidly Detect Similarity of the Alert Pathogens for the Purpose of Epidemiological Studies
by: Tomasz Bogiel, et al.
Published: (2022-11-01)

DNA Mimics Containing Non-Nucleosidic Base Surrogates
by: Simon M. Langenegger, et al.
Published: (2005-11-01)

Microsequencing of proteins electrotransferred onto immobilizing matrices from polyacrylamide gel electrophoresis: application to an insoluble protein/
by: 246011 Hirano, Hisashi, et al.

Isolation of microgram quantities of proteins from polyacrylamide gels for amino acid sequence analysis/
by: Hunkapiller, Michael W.

Unusual presentation of a late complication in a polyacrylamide gel-injected breast
by: Hui-Ling Peng, et al.
Published: (2017-01-01)

Dancing with Nucleobases: Unveiling the Self-Assembly Properties of DNA and RNA Base-Containing Molecules for Gel Formation
by: Pasqualina Liana Scognamiglio, et al.
Published: (2023-12-01)

Highly Sensitive Detection of DNA Fragments by an Inexpensive and Simple Method Fabricated In-House Blue LED Transilluminator
by: Ryosuke Ishii
Published: (2023-11-01)

A simple drying solution that minimizes cracking during air-drying of polyacrylamide gels
by: Kristan M Gomez, et al.
Published: (2023-02-01)

Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA
by: Daniel G. Mulcahy, et al.
Published: (2016-10-01)

Tuning Transport Phenomena in Agarose Gels for the Control of Protein Nucleation Density and Crystal Form
by: Fiora Artusio, et al.
Published: (2021-04-01)

Polyacrylamide Polymer Gel Systems for Conformance Control Technology: A Review
by: Ali Al-delfi, et al.
Published: (2022-09-01)

Rapid isoelectric focusing in a vertical polyacrylamide minigel system /
by: Robertson, Eugene F.

Trioleyl Pyridinium, a Cationic Transfection Agent for the Lipofection of Therapeutic Oligonucleotides into Mammalian Cells
by: Ana Delgado, et al.
Published: (2023-01-01)

Evaluation of Enzyme Agarose Gels for Cleaning Complex Substrates in Cultural Heritage
by: Mattia Morlotti, et al.
Published: (2023-12-01)

Analytical Perspectives in the Study of Polyvalent Interactions of Free and Surface-Bound Oligonucleotides and Their Implications in Affinity Biosensing
by: Laura-Elena Gliga, et al.
Published: (2022-12-01)

Tuning G-Quadruplex Nanostructures with Lipids. Towards Designing Hybrid Scaffolds for Oligonucleotide Delivery
by: Santiago Grijalvo, et al.
Published: (2020-12-01)

Purification of Peptide Components including Melittin from Bee Venom using gel filtration chromatography and propionic acid/urea polyacrylamide gel electrophoresis
by: Young Chon Choi, et al.
Published: (2006-06-01)

Low-cost modular systems for agarose gel documentation
by: Alfredo G Gonzalez, et al.
Published: (2022-11-01)

Drug release from PLGA microparticles can be slowed down by a surrounding hydrogel
by: L.A. Lefol, et al.
Published: (2023-12-01)

Fabrication of 3D GelMA Scaffolds Using Agarose Microgel Embedded Printing
by: Bo Yang, et al.
Published: (2022-03-01)

Determination of bovine and porcine gelatin polypeptides using sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE)
by: Tukiran, Nur Azira
Published: (2012)

Spectroscopic Properties of Two 5′-(4-Dimethylamino)Azobenzene Conjugated G-Quadruplex Forming Oligonucleotides
by: Concetta Imperatore, et al.
Published: (2020-09-01)

Native Agarose Gels and Contact Blotting as Means to Optimize the Protocols for the Formation of Antigen–Ligand Complexes
by: Claudia D’Ercole, et al.
Published: (2023-09-01)

Synthesis and characterization of acrylamide/zeolite nanocomposite hydrogels for aqueous zinc-ion batteries
by: Hongfei Bao, et al.
Published: (2024-01-01)

Anticoagulant Oligonucleotide–Peptide Conjugates: Identification of Thrombin Aptamer Conjugates with Improved Characteristics
by: Vladimir B. Tsvetkov, et al.
Published: (2022-03-01)

The practice of quantitative gel electrophoresis/
by: 356233 Chrambach, Andreas
Published: (1985)

Fabrication of CoCr2O4 nanoparticles using polyacrylamide gel polymer template
by: Hassanzadeh-Tabrizi S.A.
Published: (2023-02-01)

Effect of aluminum on the isozymes of the seedlings of two soybeans [Glycine max (L.) Merrill] varieties
by: X.F. Ying, et al.
Published: (2006-06-01)

G4 Matters—The Influence of G-Quadruplex Structural Elements on the Antiproliferative Properties of G-Rich Oligonucleotides
by: Carolina Roxo, et al.
Published: (2021-05-01)

Properties of Parallel Tetramolecular G-Quadruplex Carrying <i>N</i>-Acetylgalactosamine as Potential Enhancer for Oligonucleotide Delivery to Hepatocytes
by: Anna Clua, et al.
Published: (2022-06-01)

Chemical Biology of G-quadruplex and i-motif DNA: use of topologically constrained DNA
by: Dejeu, Jérôme, et al.
Published: (2023-10-01)

Detection of Pathogens and Antimicrobial Resistance Genes at Low Concentration via Electrochemical Oligonucleotide Tags
by: Neil Gordon, et al.
Published: (2023-05-01)

Binding characterization of anthraquinone derivatives by stabilizing G-quadruplex DNA leads to an anticancerous activity
by: Arpita Dey, et al.
Published: (2022-12-01)

Reversibility in the Physical Properties of Agarose Gels following an Exchange in Solvent and Non-Solvent
by: Denis C. D. Roux, et al.
Published: (2024-03-01)

Spontaneous and Electrically Induced Anisotropy of Composite Agarose Gels
by: Alexandar M. Zhivkov, et al.
Published: (2022-11-01)