Sequential detection of influenza epidemics by the Kolmogorov-Smirnov test
<p>Abstract</p> <p>Background</p> <p>Influenza is a well known and common human respiratory infection, causing significant morbidity and mortality every year. Despite Influenza variability, fast and reliable outbreak detection is required for health resource planning. C...
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BMC
2012-10-01
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| Series: | BMC Medical Informatics and Decision Making |
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| Online Access: | http://www.biomedcentral.com/1472-6947/12/112 |
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| author | Closas Pau Coma Ermengol Méndez Leonardo |
| author_facet | Closas Pau Coma Ermengol Méndez Leonardo |
| author_sort | Closas Pau |
| collection | DOAJ |
| description | <p>Abstract</p> <p>Background</p> <p>Influenza is a well known and common human respiratory infection, causing significant morbidity and mortality every year. Despite Influenza variability, fast and reliable outbreak detection is required for health resource planning. Clinical health records, as published by the Diagnosticat database in Catalonia, host useful data for probabilistic detection of influenza outbreaks.</p> <p>Methods</p> <p>This paper proposes a statistical method to detect influenza epidemic activity. Non-epidemic incidence rates are modeled against the exponential distribution, and the maximum likelihood estimate for the decaying factor <it>λ </it>is calculated. The sequential detection algorithm updates the parameter as new data becomes available. Binary epidemic detection of weekly incidence rates is assessed by Kolmogorov-Smirnov test on the absolute difference between the empirical and the cumulative density function of the estimated exponential distribution with significance level 0 ≤<it> α </it>≤ 1.</p> <p>Results</p> <p>The main advantage with respect to other approaches is the adoption of a statistically meaningful test, which provides an indicator of epidemic activity with an associated probability. The detection algorithm was initiated with parameter <it>λ</it><sub>0 </sub>= 3.8617 estimated from the training sequence (corresponding to non-epidemic incidence rates of the 2008-2009 influenza season) and sequentially updated. Kolmogorov-Smirnov test detected the following weeks as epidemic for each influenza season: 50−10 (2008-2009 season), 38−50 (2009-2010 season), weeks 50−9 (2010-2011 season) and weeks 3 to 12 for the current 2011-2012 season.</p> <p>Conclusions</p> <p>Real medical data was used to assess the validity of the approach, as well as to construct a realistic statistical model of weekly influenza incidence rates in non-epidemic periods. For the tested data, the results confirmed the ability of the algorithm to detect the start and the end of epidemic periods. In general, the proposed test could be applied to other data sets to quickly detect influenza outbreaks. The sequential structure of the test makes it suitable for implementation in many platforms at a low computational cost without requiring to store large data sets.</p> |
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| language | English |
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| publishDate | 2012-10-01 |
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| spelling | doaj.art-2bf4b9f165ae49dfa060e47498c5c6cb2022-12-21T18:28:20ZengBMCBMC Medical Informatics and Decision Making1472-69472012-10-0112111210.1186/1472-6947-12-112Sequential detection of influenza epidemics by the Kolmogorov-Smirnov testClosas PauComa ErmengolMéndez Leonardo<p>Abstract</p> <p>Background</p> <p>Influenza is a well known and common human respiratory infection, causing significant morbidity and mortality every year. Despite Influenza variability, fast and reliable outbreak detection is required for health resource planning. Clinical health records, as published by the Diagnosticat database in Catalonia, host useful data for probabilistic detection of influenza outbreaks.</p> <p>Methods</p> <p>This paper proposes a statistical method to detect influenza epidemic activity. Non-epidemic incidence rates are modeled against the exponential distribution, and the maximum likelihood estimate for the decaying factor <it>λ </it>is calculated. The sequential detection algorithm updates the parameter as new data becomes available. Binary epidemic detection of weekly incidence rates is assessed by Kolmogorov-Smirnov test on the absolute difference between the empirical and the cumulative density function of the estimated exponential distribution with significance level 0 ≤<it> α </it>≤ 1.</p> <p>Results</p> <p>The main advantage with respect to other approaches is the adoption of a statistically meaningful test, which provides an indicator of epidemic activity with an associated probability. The detection algorithm was initiated with parameter <it>λ</it><sub>0 </sub>= 3.8617 estimated from the training sequence (corresponding to non-epidemic incidence rates of the 2008-2009 influenza season) and sequentially updated. Kolmogorov-Smirnov test detected the following weeks as epidemic for each influenza season: 50−10 (2008-2009 season), 38−50 (2009-2010 season), weeks 50−9 (2010-2011 season) and weeks 3 to 12 for the current 2011-2012 season.</p> <p>Conclusions</p> <p>Real medical data was used to assess the validity of the approach, as well as to construct a realistic statistical model of weekly influenza incidence rates in non-epidemic periods. For the tested data, the results confirmed the ability of the algorithm to detect the start and the end of epidemic periods. In general, the proposed test could be applied to other data sets to quickly detect influenza outbreaks. The sequential structure of the test makes it suitable for implementation in many platforms at a low computational cost without requiring to store large data sets.</p>http://www.biomedcentral.com/1472-6947/12/112InfluenzaSequential methodsStatistical testDetection theory |
| spellingShingle | Closas Pau Coma Ermengol Méndez Leonardo Sequential detection of influenza epidemics by the Kolmogorov-Smirnov test BMC Medical Informatics and Decision Making Influenza Sequential methods Statistical test Detection theory |
| title | Sequential detection of influenza epidemics by the Kolmogorov-Smirnov test |
| title_full | Sequential detection of influenza epidemics by the Kolmogorov-Smirnov test |
| title_fullStr | Sequential detection of influenza epidemics by the Kolmogorov-Smirnov test |
| title_full_unstemmed | Sequential detection of influenza epidemics by the Kolmogorov-Smirnov test |
| title_short | Sequential detection of influenza epidemics by the Kolmogorov-Smirnov test |
| title_sort | sequential detection of influenza epidemics by the kolmogorov smirnov test |
| topic | Influenza Sequential methods Statistical test Detection theory |
| url | http://www.biomedcentral.com/1472-6947/12/112 |
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