Variable selection from a feature representing protein sequences: a case of classification on bacterial type IV secreted effectors

Variable selection from a feature representing protein sequences: a case of classification on bacterial type IV secreted effectors

Abstract Background Classification of certain proteins with specific functions is momentous for biological research. Encoding approaches of protein sequences for feature extraction play an important role in protein classification. Many computational methods (namely classifiers) are used for classifi...

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Bibliographic Details
Main Authors: Jian Zhang, Lixin Lv, Donglei Lu, Denan Kong, Mohammed Abdoh Ali Al-Alashaari, Xudong Zhao
Format: Article
Language:English
Published: BMC 2020-10-01
Series:BMC Bioinformatics
Subjects:
Feature selection
Variable importance
Accumulated scoring
Classification
Bacterial type IV secreted effectors
Online Access:http://link.springer.com/article/10.1186/s12859-020-03826-6

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