Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records
Population-based surveys are the gold standard for estimating seroprevalence but are expensive and often only capture a small geographic area or window of time. This study describes a new platform, SCALE-IT, for serosurveillance based on algorithmic sampling of electronic health records, and uses it...
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Nature Portfolio
2021-06-01
|
| Series: | Nature Communications |
| Online Access: | https://doi.org/10.1038/s41467-021-23651-6 |
| _version_ | 1818422529208877056 |
|---|---|
| author | Isobel Routledge Adrienne Epstein Saki Takahashi Owen Janson Jill Hakim Elias Duarte Keirstinne Turcios Joanna Vinden Kirk Sujishi Jesus Rangel Marcelina Coh Lee Besana Wai-Kit Ho Ching-Ying Oon Chui Mei Ong Cassandra Yun Kara Lynch Alan H. B. Wu Wesley Wu William Karlon Edward Thornborrow Michael J. Peluso Timothy J. Henrich John E. Pak Jessica Briggs Bryan Greenhouse Isabel Rodriguez-Barraquer |
| author_facet | Isobel Routledge Adrienne Epstein Saki Takahashi Owen Janson Jill Hakim Elias Duarte Keirstinne Turcios Joanna Vinden Kirk Sujishi Jesus Rangel Marcelina Coh Lee Besana Wai-Kit Ho Ching-Ying Oon Chui Mei Ong Cassandra Yun Kara Lynch Alan H. B. Wu Wesley Wu William Karlon Edward Thornborrow Michael J. Peluso Timothy J. Henrich John E. Pak Jessica Briggs Bryan Greenhouse Isabel Rodriguez-Barraquer |
| author_sort | Isobel Routledge |
| collection | DOAJ |
| description | Population-based surveys are the gold standard for estimating seroprevalence but are expensive and often only capture a small geographic area or window of time. This study describes a new platform, SCALE-IT, for serosurveillance based on algorithmic sampling of electronic health records, and uses it to estimate the seroprevalence of SARS-CoV-2 in San Francisco. |
| first_indexed | 2024-12-14T13:27:42Z |
| format | Article |
| id | doaj.art-2c73ad75f25940cfa9325487cf55c8e4 |
| institution | Directory Open Access Journal |
| issn | 2041-1723 |
| language | English |
| last_indexed | 2024-12-14T13:27:42Z |
| publishDate | 2021-06-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Nature Communications |
| spelling | doaj.art-2c73ad75f25940cfa9325487cf55c8e42022-12-21T22:59:48ZengNature PortfolioNature Communications2041-17232021-06-011211910.1038/s41467-021-23651-6Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health recordsIsobel Routledge0Adrienne Epstein1Saki Takahashi2Owen Janson3Jill Hakim4Elias Duarte5Keirstinne Turcios6Joanna Vinden7Kirk Sujishi8Jesus Rangel9Marcelina Coh10Lee Besana11Wai-Kit Ho12Ching-Ying Oon13Chui Mei Ong14Cassandra Yun15Kara Lynch16Alan H. B. Wu17Wesley Wu18William Karlon19Edward Thornborrow20Michael J. Peluso21Timothy J. Henrich22John E. Pak23Jessica Briggs24Bryan Greenhouse25Isabel Rodriguez-Barraquer26University of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoChan Zuckerberg BiohubUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoChan Zuckerberg BiohubUniversity of California San FranciscoUniversity of California San FranciscoUniversity of California San FranciscoPopulation-based surveys are the gold standard for estimating seroprevalence but are expensive and often only capture a small geographic area or window of time. This study describes a new platform, SCALE-IT, for serosurveillance based on algorithmic sampling of electronic health records, and uses it to estimate the seroprevalence of SARS-CoV-2 in San Francisco.https://doi.org/10.1038/s41467-021-23651-6 |
| spellingShingle | Isobel Routledge Adrienne Epstein Saki Takahashi Owen Janson Jill Hakim Elias Duarte Keirstinne Turcios Joanna Vinden Kirk Sujishi Jesus Rangel Marcelina Coh Lee Besana Wai-Kit Ho Ching-Ying Oon Chui Mei Ong Cassandra Yun Kara Lynch Alan H. B. Wu Wesley Wu William Karlon Edward Thornborrow Michael J. Peluso Timothy J. Henrich John E. Pak Jessica Briggs Bryan Greenhouse Isabel Rodriguez-Barraquer Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records Nature Communications |
| title | Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records |
| title_full | Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records |
| title_fullStr | Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records |
| title_full_unstemmed | Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records |
| title_short | Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records |
| title_sort | citywide serosurveillance of the initial sars cov 2 outbreak in san francisco using electronic health records |
| url | https://doi.org/10.1038/s41467-021-23651-6 |
| work_keys_str_mv | AT isobelroutledge citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT adrienneepstein citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT sakitakahashi citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT owenjanson citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT jillhakim citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT eliasduarte citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT keirstinneturcios citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT joannavinden citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT kirksujishi citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT jesusrangel citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT marcelinacoh citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT leebesana citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT waikitho citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT chingyingoon citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT chuimeiong citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT cassandrayun citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT karalynch citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT alanhbwu citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT wesleywu citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT williamkarlon citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT edwardthornborrow citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT michaeljpeluso citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT timothyjhenrich citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT johnepak citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT jessicabriggs citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT bryangreenhouse citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords AT isabelrodriguezbarraquer citywideserosurveillanceoftheinitialsarscov2outbreakinsanfranciscousingelectronichealthrecords |