The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae)
The complete chloroplast genome of Hovenia dulcis was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Hovenia with 162,962 bp in length, including a large single-copy (LSC: 90,900 bp) region and a small single-copy (SSC: 18,920 bp) which were sepa...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-03-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1887772 |
| _version_ | 1797638920699117568 |
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| author | Dan Liu Bo-qiang Tong Wen-Qing Li Lei Wang Yang Xian Biao Han Xin Dong Yi-Zeng Lu Wei Li Xiao-Man Xie |
| author_facet | Dan Liu Bo-qiang Tong Wen-Qing Li Lei Wang Yang Xian Biao Han Xin Dong Yi-Zeng Lu Wei Li Xiao-Man Xie |
| author_sort | Dan Liu |
| collection | DOAJ |
| description | The complete chloroplast genome of Hovenia dulcis was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Hovenia with 162,962 bp in length, including a large single-copy (LSC: 90,900 bp) region and a small single-copy (SSC: 18,920 bp) which were separated by a pair of inverted repeats (IRa, b: 26,571 bp) region. The overall GC content is 36.6%. A total of 130 genes was annotated which contained 85 protein-coding genes including the Trans splicing gene of rps12, 37 tRNA genes, and 8 rRNA genes. ML phylogenetic analysis compared with 6 expressed chloroplast genomes of Rhamnaceae revealed that H. dulcis was closely related to the species of Zizyphus, and which were clustered into a group with Z. jujuba, Z. mauritiana and Z. spina-christi. Hovenia dulcis was relatively distant to other species of Berchemiella and Rhamnus, which were clustered into another group. |
| first_indexed | 2024-03-11T13:10:21Z |
| format | Article |
| id | doaj.art-2cbb294dc15341edb9fb8baa1d03c4b6 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:10:21Z |
| publishDate | 2021-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2cbb294dc15341edb9fb8baa1d03c4b62023-11-03T14:16:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-03-016391691710.1080/23802359.2021.18877721887772The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae)Dan Liu0Bo-qiang Tong1Wen-Qing Li2Lei Wang3Yang Xian4Biao Han5Xin Dong6Yi-Zeng Lu7Wei Li8Xiao-Man Xie9College of Biological Sciences and Biotechnology, Beijing Forestry UniversityShandong Forest Germplasm Resources CenterShandong Forest Germplasm Resources CenterShandong Forest Germplasm Resources CenterShandong Forest Germplasm Resources CenterShandong Forest Germplasm Resources CenterShandong Forest Germplasm Resources CenterShandong Forest Germplasm Resources CenterShandong Forest Germplasm Resources CenterShandong Forest Germplasm Resources CenterThe complete chloroplast genome of Hovenia dulcis was sequenced with Illumina HiSeq 2000 platform. It was a typical quadruple structure as other plants of Hovenia with 162,962 bp in length, including a large single-copy (LSC: 90,900 bp) region and a small single-copy (SSC: 18,920 bp) which were separated by a pair of inverted repeats (IRa, b: 26,571 bp) region. The overall GC content is 36.6%. A total of 130 genes was annotated which contained 85 protein-coding genes including the Trans splicing gene of rps12, 37 tRNA genes, and 8 rRNA genes. ML phylogenetic analysis compared with 6 expressed chloroplast genomes of Rhamnaceae revealed that H. dulcis was closely related to the species of Zizyphus, and which were clustered into a group with Z. jujuba, Z. mauritiana and Z. spina-christi. Hovenia dulcis was relatively distant to other species of Berchemiella and Rhamnus, which were clustered into another group.http://dx.doi.org/10.1080/23802359.2021.1887772hovenia dulcischloroplast genomephylogenetic relationship |
| spellingShingle | Dan Liu Bo-qiang Tong Wen-Qing Li Lei Wang Yang Xian Biao Han Xin Dong Yi-Zeng Lu Wei Li Xiao-Man Xie The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae) Mitochondrial DNA. Part B. Resources hovenia dulcis chloroplast genome phylogenetic relationship |
| title | The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae) |
| title_full | The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae) |
| title_fullStr | The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae) |
| title_full_unstemmed | The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae) |
| title_short | The first complete chloroplast genome of Hovenia dulcis Thunb. (Rhamnaceae) |
| title_sort | first complete chloroplast genome of hovenia dulcis thunb rhamnaceae |
| topic | hovenia dulcis chloroplast genome phylogenetic relationship |
| url | http://dx.doi.org/10.1080/23802359.2021.1887772 |
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