The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China
Abies beshanzuensis is critically endangered and endemic to Zhengjiang province of China, with only three surviving individuals. In present study, we reported the complete chloroplast (cp) genome of Abies beshanzuensis. The complete chloroplast genome size is 121,399 bp. In total, 114genes were iden...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1502638 |
| _version_ | 1797640594810470400 |
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| author | Yi-Zhen Shao Jin-Tao Hu Peng-Zhen Fan Yan-Yan Liu Yi-Han Wang |
| author_facet | Yi-Zhen Shao Jin-Tao Hu Peng-Zhen Fan Yan-Yan Liu Yi-Han Wang |
| author_sort | Yi-Zhen Shao |
| collection | DOAJ |
| description | Abies beshanzuensis is critically endangered and endemic to Zhengjiang province of China, with only three surviving individuals. In present study, we reported the complete chloroplast (cp) genome of Abies beshanzuensis. The complete chloroplast genome size is 121,399 bp. In total, 114genes were identified, including 68 peptide-encoding genes, 35 tRNA genes, four rRNA genes, six open reading frames and one pseudogene. Loss of ndh genes was also identified in the genome of A. beshanzuensis like other genomes in the family Pinaceae. Thirteen genes contain one (11 genes) or two (rps12 and ycf3 genes) introns. Inverted repeat sequences located in 42-kb inversion points (1186 bp) include trnS-psaM-ycf12-trnG genes. In phylogenetic analysis, the tree confirms that the four Abies species are strongly supported as monophyletic. The complete plastome of A. beshanzuensis will provide potential genetic resources for further conservation and evolutionary studies of this highly endangered species. |
| first_indexed | 2024-03-11T13:34:08Z |
| format | Article |
| id | doaj.art-2cf33f4ad2eb43fc87740f7b6d5d2f68 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:08Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2cf33f4ad2eb43fc87740f7b6d5d2f682023-11-02T15:57:25ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013292192210.1080/23802359.2018.15026381502638The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south ChinaYi-Zhen Shao0Jin-Tao Hu1Peng-Zhen Fan2Yan-Yan Liu3Yi-Han Wang4Henan Agriculture UniversityHenan Agriculture UniversityHenan Agriculture UniversityHenan Agriculture UniversityHenan Agriculture UniversityAbies beshanzuensis is critically endangered and endemic to Zhengjiang province of China, with only three surviving individuals. In present study, we reported the complete chloroplast (cp) genome of Abies beshanzuensis. The complete chloroplast genome size is 121,399 bp. In total, 114genes were identified, including 68 peptide-encoding genes, 35 tRNA genes, four rRNA genes, six open reading frames and one pseudogene. Loss of ndh genes was also identified in the genome of A. beshanzuensis like other genomes in the family Pinaceae. Thirteen genes contain one (11 genes) or two (rps12 and ycf3 genes) introns. Inverted repeat sequences located in 42-kb inversion points (1186 bp) include trnS-psaM-ycf12-trnG genes. In phylogenetic analysis, the tree confirms that the four Abies species are strongly supported as monophyletic. The complete plastome of A. beshanzuensis will provide potential genetic resources for further conservation and evolutionary studies of this highly endangered species.http://dx.doi.org/10.1080/23802359.2018.1502638abies beshanzuensischloroplast genomeendangeredphylogenetic |
| spellingShingle | Yi-Zhen Shao Jin-Tao Hu Peng-Zhen Fan Yan-Yan Liu Yi-Han Wang The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China Mitochondrial DNA. Part B. Resources abies beshanzuensis chloroplast genome endangered phylogenetic |
| title | The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China |
| title_full | The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China |
| title_fullStr | The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China |
| title_full_unstemmed | The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China |
| title_short | The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China |
| title_sort | complete chloroplast genome sequence of abies beshanzuensis a highly endangered fir species from south china |
| topic | abies beshanzuensis chloroplast genome endangered phylogenetic |
| url | http://dx.doi.org/10.1080/23802359.2018.1502638 |
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