The complete chloroplast genome sequence of Xylia xylocarpa
The first complete chloroplast genome (cpDNA) sequence of Xylia xylocarpa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 161,288 bp in length, contains a large single copy region (LSC) of 89,186 bp and a small single copy region (SSC) of 19,354 bp, which were...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1715297 |
| _version_ | 1797639404396740608 |
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| author | Yunfen Geng Yunqing Li Jinfeng Zhang Yi Wang |
| author_facet | Yunfen Geng Yunqing Li Jinfeng Zhang Yi Wang |
| author_sort | Yunfen Geng |
| collection | DOAJ |
| description | The first complete chloroplast genome (cpDNA) sequence of Xylia xylocarpa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 161,288 bp in length, contains a large single copy region (LSC) of 89,186 bp and a small single copy region (SSC) of 19,354 bp, which were separated by a pair of inverted repeats (IR) regions of 26,370 bp. The genome contains 131 genes, including 86 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 36.6%, and the corresponding values of the LSC, SSC, and IR regions are 34.1%, 30.8%, and 42.8%, respectively. Further phylogenomic analysis showed that X. xylocarpa clustered in a unique clade in Caesalpinioideae subfamily. |
| first_indexed | 2024-03-11T13:17:19Z |
| format | Article |
| id | doaj.art-2d0f31cdefdc4844bb91f8e22170fe99 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:17:19Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2d0f31cdefdc4844bb91f8e22170fe992023-11-03T11:00:21ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015174874910.1080/23802359.2020.17152971715297The complete chloroplast genome sequence of Xylia xylocarpaYunfen Geng0Yunqing Li1Jinfeng Zhang2Yi Wang3Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryThe first complete chloroplast genome (cpDNA) sequence of Xylia xylocarpa was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 161,288 bp in length, contains a large single copy region (LSC) of 89,186 bp and a small single copy region (SSC) of 19,354 bp, which were separated by a pair of inverted repeats (IR) regions of 26,370 bp. The genome contains 131 genes, including 86 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 36.6%, and the corresponding values of the LSC, SSC, and IR regions are 34.1%, 30.8%, and 42.8%, respectively. Further phylogenomic analysis showed that X. xylocarpa clustered in a unique clade in Caesalpinioideae subfamily.http://dx.doi.org/10.1080/23802359.2020.1715297xylia xylocarpachloroplastillumina sequencingphylogenetic analysis |
| spellingShingle | Yunfen Geng Yunqing Li Jinfeng Zhang Yi Wang The complete chloroplast genome sequence of Xylia xylocarpa Mitochondrial DNA. Part B. Resources xylia xylocarpa chloroplast illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of Xylia xylocarpa |
| title_full | The complete chloroplast genome sequence of Xylia xylocarpa |
| title_fullStr | The complete chloroplast genome sequence of Xylia xylocarpa |
| title_full_unstemmed | The complete chloroplast genome sequence of Xylia xylocarpa |
| title_short | The complete chloroplast genome sequence of Xylia xylocarpa |
| title_sort | complete chloroplast genome sequence of xylia xylocarpa |
| topic | xylia xylocarpa chloroplast illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1715297 |
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