Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L.
Common bean (Phaseolus vulgaris L.) is the most important grain legume in the human diet and has a role in sustainable agriculture. In this study, we obtained the complete chloroplast genome sequence of common bean using BGISEQ-500 sequencing. Its chloroplast genome size has 155,622 bp, containing a...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1502634 |
| _version_ | 1797640595027525632 |
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| author | Xianxin Meng Ming Li |
| author_facet | Xianxin Meng Ming Li |
| author_sort | Xianxin Meng |
| collection | DOAJ |
| description | Common bean (Phaseolus vulgaris L.) is the most important grain legume in the human diet and has a role in sustainable agriculture. In this study, we obtained the complete chloroplast genome sequence of common bean using BGISEQ-500 sequencing. Its chloroplast genome size has 155,622 bp, containing a large single copy region (84,924 bp), a small single copy region (18,570 bp) and a pair of IR regions (26,064 bp). The overall GC contents of the chloroplast genome were 37.9%. This circular genome contains 131 annotated genes, including 85 protein-coding genes, 37 tRNAs, and 8 rRNAs. The phylogenetic analysis using maximum likelihood (ML) method showed that Common bean has the closest relationship with Phaseolus coccineus L. This complete chloroplast genomes can be subsequently used for the genetic breeding and agricultural development of this valuable species. |
| first_indexed | 2024-03-11T13:34:09Z |
| format | Article |
| id | doaj.art-2d2b9efcea564f70bc006d683bcaaf49 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:09Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2d2b9efcea564f70bc006d683bcaaf492023-11-02T15:57:25ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013291892010.1080/23802359.2018.15026341502634Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L.Xianxin Meng0Ming Li1Northeast Agricultural UniversityNortheast Agricultural UniversityCommon bean (Phaseolus vulgaris L.) is the most important grain legume in the human diet and has a role in sustainable agriculture. In this study, we obtained the complete chloroplast genome sequence of common bean using BGISEQ-500 sequencing. Its chloroplast genome size has 155,622 bp, containing a large single copy region (84,924 bp), a small single copy region (18,570 bp) and a pair of IR regions (26,064 bp). The overall GC contents of the chloroplast genome were 37.9%. This circular genome contains 131 annotated genes, including 85 protein-coding genes, 37 tRNAs, and 8 rRNAs. The phylogenetic analysis using maximum likelihood (ML) method showed that Common bean has the closest relationship with Phaseolus coccineus L. This complete chloroplast genomes can be subsequently used for the genetic breeding and agricultural development of this valuable species.http://dx.doi.org/10.1080/23802359.2018.1502634phaseolus vulgaris l.common beanchloroplast genomephylogenetic analysishomblocks |
| spellingShingle | Xianxin Meng Ming Li Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L. Mitochondrial DNA. Part B. Resources phaseolus vulgaris l. common bean chloroplast genome phylogenetic analysis homblocks |
| title | Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L. |
| title_full | Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L. |
| title_fullStr | Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L. |
| title_full_unstemmed | Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L. |
| title_short | Characterisation of the complete chloroplast genome of the common bean, Phaseolus vulgaris L. |
| title_sort | characterisation of the complete chloroplast genome of the common bean phaseolus vulgaris l |
| topic | phaseolus vulgaris l. common bean chloroplast genome phylogenetic analysis homblocks |
| url | http://dx.doi.org/10.1080/23802359.2018.1502634 |
| work_keys_str_mv | AT xianxinmeng characterisationofthecompletechloroplastgenomeofthecommonbeanphaseolusvulgarisl AT mingli characterisationofthecompletechloroplastgenomeofthecommonbeanphaseolusvulgarisl |